Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28003 | 5' | -59.4 | NC_005887.1 | + | 41597 | 0.7 | 0.244927 |
Target: 5'- aGCg-GCGGCCcagGUGCGGCGGccGGCGc -3' miRNA: 3'- gCGagUGCCGG---UACGCCGCCu-UCGUc -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 39786 | 1.08 | 0.000314 |
Target: 5'- cCGCUCACGGCCAUGCGGCGGAAGCAGu -3' miRNA: 3'- -GCGAGUGCCGGUACGCCGCCUUCGUC- -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 37576 | 0.69 | 0.278266 |
Target: 5'- gGCUCGCGGagccGCGGCGGAAuuCGGa -3' miRNA: 3'- gCGAGUGCCgguaCGCCGCCUUc-GUC- -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 36879 | 0.67 | 0.347177 |
Target: 5'- gCGC-CAuCGGCCugcgucGUGGUGGAugcGGCAGg -3' miRNA: 3'- -GCGaGU-GCCGGua----CGCCGCCU---UCGUC- -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 36839 | 0.66 | 0.390425 |
Target: 5'- uGCU-GCGGCCGgugcUGCGGcCGGugcuGCGGc -3' miRNA: 3'- gCGAgUGCCGGU----ACGCC-GCCuu--CGUC- -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 34842 | 0.69 | 0.285352 |
Target: 5'- aCGCUCGgGGUCGUGCcGCcGAGGguGu -3' miRNA: 3'- -GCGAGUgCCGGUACGcCGcCUUCguC- -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 34269 | 0.68 | 0.318224 |
Target: 5'- gCGCUCGCGGCuUgcgcaugccgucgccGUGCGGCuGAcuGCGGg -3' miRNA: 3'- -GCGAGUGCCG-G---------------UACGCCGcCUu-CGUC- -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 32258 | 0.66 | 0.423668 |
Target: 5'- cCGUcggCGCgGGCCGcccacacgacggaaUGCGGCuccugcuGGAAGCAGa -3' miRNA: 3'- -GCGa--GUG-CCGGU--------------ACGCCG-------CCUUCGUC- -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 31044 | 0.7 | 0.244927 |
Target: 5'- gCGCUCGCugccgagccGGCCGcUGCGaGCaGAGGUAGa -3' miRNA: 3'- -GCGAGUG---------CCGGU-ACGC-CGcCUUCGUC- -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 29763 | 0.74 | 0.126229 |
Target: 5'- aGCgUCGCGGCCggGuCGGCGGAcaccaugcgcaugccGGCGGc -3' miRNA: 3'- gCG-AGUGCCGGuaC-GCCGCCU---------------UCGUC- -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 29409 | 0.69 | 0.278265 |
Target: 5'- aGCgUCGCGGCUugcUGCGGCaGGGAcGCGc -3' miRNA: 3'- gCG-AGUGCCGGu--ACGCCG-CCUU-CGUc -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 27371 | 0.68 | 0.299951 |
Target: 5'- gGCcugCGCGGCCugcGCGGCGuAGGCGu -3' miRNA: 3'- gCGa--GUGCCGGua-CGCCGCcUUCGUc -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 26658 | 0.67 | 0.347177 |
Target: 5'- gGCggaaUCAucCGGCCGcGCGGCGGuGAGCuGg -3' miRNA: 3'- gCG----AGU--GCCGGUaCGCCGCC-UUCGuC- -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 24120 | 0.73 | 0.135679 |
Target: 5'- uGCUgCGCGuGUCGUGCGGUGuGAAGCGc -3' miRNA: 3'- gCGA-GUGC-CGGUACGCCGC-CUUCGUc -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 23189 | 0.66 | 0.427465 |
Target: 5'- gCGCUCGCGaUCA--CGGcCGGggGCGGc -3' miRNA: 3'- -GCGAGUGCcGGUacGCC-GCCuuCGUC- -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 19125 | 0.71 | 0.183229 |
Target: 5'- cCGCUCGCGuGCCGU-CGGCGuggcccuuGAAGUAGc -3' miRNA: 3'- -GCGAGUGC-CGGUAcGCCGC--------CUUCGUC- -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 18901 | 0.67 | 0.364058 |
Target: 5'- gGCUUcCGGUgGaaGCGGCGGGauGGCGGg -3' miRNA: 3'- gCGAGuGCCGgUa-CGCCGCCU--UCGUC- -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 17741 | 0.7 | 0.238671 |
Target: 5'- aCGCUCggcACGGCCGcGCGGCuGAuGGCGc -3' miRNA: 3'- -GCGAG---UGCCGGUaCGCCGcCU-UCGUc -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 17493 | 0.67 | 0.381498 |
Target: 5'- aGCUgACGGCCGUGCaugauGGCacGGAAauGCGc -3' miRNA: 3'- gCGAgUGCCGGUACG-----CCG--CCUU--CGUc -5' |
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28003 | 5' | -59.4 | NC_005887.1 | + | 15771 | 0.68 | 0.315121 |
Target: 5'- gGC-CGCGGCCGcgaaGGCGcaGAAGCAGa -3' miRNA: 3'- gCGaGUGCCGGUacg-CCGC--CUUCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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