miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28003 5' -59.4 NC_005887.1 + 31044 0.7 0.244927
Target:  5'- gCGCUCGCugccgagccGGCCGcUGCGaGCaGAGGUAGa -3'
miRNA:   3'- -GCGAGUG---------CCGGU-ACGC-CGcCUUCGUC- -5'
28003 5' -59.4 NC_005887.1 + 19125 0.71 0.183229
Target:  5'- cCGCUCGCGuGCCGU-CGGCGuggcccuuGAAGUAGc -3'
miRNA:   3'- -GCGAGUGC-CGGUAcGCCGC--------CUUCGUC- -5'
28003 5' -59.4 NC_005887.1 + 7014 0.72 0.168963
Target:  5'- aGCUCGUGGCCGgccgccGCGGCGcGcGGCAGu -3'
miRNA:   3'- gCGAGUGCCGGUa-----CGCCGC-CuUCGUC- -5'
28003 5' -59.4 NC_005887.1 + 29763 0.74 0.126229
Target:  5'- aGCgUCGCGGCCggGuCGGCGGAcaccaugcgcaugccGGCGGc -3'
miRNA:   3'- gCG-AGUGCCGGuaC-GCCGCCU---------------UCGUC- -5'
28003 5' -59.4 NC_005887.1 + 27371 0.68 0.299951
Target:  5'- gGCcugCGCGGCCugcGCGGCGuAGGCGu -3'
miRNA:   3'- gCGa--GUGCCGGua-CGCCGCcUUCGUc -5'
28003 5' -59.4 NC_005887.1 + 36879 0.67 0.347177
Target:  5'- gCGC-CAuCGGCCugcgucGUGGUGGAugcGGCAGg -3'
miRNA:   3'- -GCGaGU-GCCGGua----CGCCGCCU---UCGUC- -5'
28003 5' -59.4 NC_005887.1 + 26658 0.67 0.347177
Target:  5'- gGCggaaUCAucCGGCCGcGCGGCGGuGAGCuGg -3'
miRNA:   3'- gCG----AGU--GCCGGUaCGCCGCC-UUCGuC- -5'
28003 5' -59.4 NC_005887.1 + 18901 0.67 0.364058
Target:  5'- gGCUUcCGGUgGaaGCGGCGGGauGGCGGg -3'
miRNA:   3'- gCGAGuGCCGgUa-CGCCGCCU--UCGUC- -5'
28003 5' -59.4 NC_005887.1 + 36839 0.66 0.390425
Target:  5'- uGCU-GCGGCCGgugcUGCGGcCGGugcuGCGGc -3'
miRNA:   3'- gCGAgUGCCGGU----ACGCC-GCCuu--CGUC- -5'
28003 5' -59.4 NC_005887.1 + 2008 0.66 0.408684
Target:  5'- gCGCUCgACGGCCAguccauuucgGCGGCGaacgucuucGGCAu -3'
miRNA:   3'- -GCGAG-UGCCGGUa---------CGCCGCcu-------UCGUc -5'
28003 5' -59.4 NC_005887.1 + 32258 0.66 0.423668
Target:  5'- cCGUcggCGCgGGCCGcccacacgacggaaUGCGGCuccugcuGGAAGCAGa -3'
miRNA:   3'- -GCGa--GUG-CCGGU--------------ACGCCG-------CCUUCGUC- -5'
28003 5' -59.4 NC_005887.1 + 14368 0.66 0.427465
Target:  5'- aCGCgauuCGGCCcgagccgGCGGCGGcaaGAGCGa -3'
miRNA:   3'- -GCGagu-GCCGGua-----CGCCGCC---UUCGUc -5'
28003 5' -59.4 NC_005887.1 + 39786 1.08 0.000314
Target:  5'- cCGCUCACGGCCAUGCGGCGGAAGCAGu -3'
miRNA:   3'- -GCGAGUGCCGGUACGCCGCCUUCGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.