miRNA display CGI


Results 41 - 56 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28005 3' -53.6 NC_005887.1 + 14985 0.66 0.665207
Target:  5'- cGCGCAGGccgCGcAGGCCG-CAGGCGu- -3'
miRNA:   3'- uUGCGUCCa--GC-UUCGGUaGUUCGUgc -5'
28005 3' -53.6 NC_005887.1 + 31887 0.66 0.665207
Target:  5'- gGugGUGGGcgUCGGccAGCCGgUCAGGCAUGc -3'
miRNA:   3'- -UugCGUCC--AGCU--UCGGU-AGUUCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 39376 0.66 0.665207
Target:  5'- gGACGCAGuaacCGAGGCCGgc-GGCGCa -3'
miRNA:   3'- -UUGCGUCca--GCUUCGGUaguUCGUGc -5'
28005 3' -53.6 NC_005887.1 + 41745 0.66 0.665207
Target:  5'- cGGCGCGcgggcucuGGUCGAAGaCCAcgaUCGAGguCGu -3'
miRNA:   3'- -UUGCGU--------CCAGCUUC-GGU---AGUUCguGC- -5'
28005 3' -53.6 NC_005887.1 + 40330 0.66 0.665207
Target:  5'- aGACGUucgccGcCGAaauggacuGGCCGUCGAGCGCGg -3'
miRNA:   3'- -UUGCGuc---CaGCU--------UCGGUAGUUCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 19206 0.66 0.676643
Target:  5'- cACGgGGGUCGAGGaUCGUCAcGC-CGu -3'
miRNA:   3'- uUGCgUCCAGCUUC-GGUAGUuCGuGC- -5'
28005 3' -53.6 NC_005887.1 + 7216 0.66 0.688034
Target:  5'- uGCGCAGG-CGcuGUCggcGUCGGGCGCa -3'
miRNA:   3'- uUGCGUCCaGCuuCGG---UAGUUCGUGc -5'
28005 3' -53.6 NC_005887.1 + 30865 0.66 0.699365
Target:  5'- uGCGCuGGUCcuGAuGCCA--GAGCGCGa -3'
miRNA:   3'- uUGCGuCCAG--CUuCGGUagUUCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 25892 0.66 0.699365
Target:  5'- cGCGC-GGUCGAGcgcauGCCcgCGcGCACGc -3'
miRNA:   3'- uUGCGuCCAGCUU-----CGGuaGUuCGUGC- -5'
28005 3' -53.6 NC_005887.1 + 26321 0.66 0.710625
Target:  5'- -cUGCAGGUUcAGGCCGUgGccGGCGCu -3'
miRNA:   3'- uuGCGUCCAGcUUCGGUAgU--UCGUGc -5'
28005 3' -53.6 NC_005887.1 + 4532 0.66 0.710625
Target:  5'- cGGCGUcccGGUCGAGGCgAU-GAGCACc -3'
miRNA:   3'- -UUGCGu--CCAGCUUCGgUAgUUCGUGc -5'
28005 3' -53.6 NC_005887.1 + 36780 0.66 0.720688
Target:  5'- uGGCGCAGGUCagcgucggcgauaGAuugcAGCCAcgUggGCGCa -3'
miRNA:   3'- -UUGCGUCCAG-------------CU----UCGGUa-GuuCGUGc -5'
28005 3' -53.6 NC_005887.1 + 35143 0.66 0.721801
Target:  5'- cGGCGCcacGGaCGGgcGGCCGUCAcgcuGCACGa -3'
miRNA:   3'- -UUGCGu--CCaGCU--UCGGUAGUu---CGUGC- -5'
28005 3' -53.6 NC_005887.1 + 35622 0.66 0.721801
Target:  5'- cGCcCGGGUUGAAGUCGcUCGGGCugaGCGg -3'
miRNA:   3'- uUGcGUCCAGCUUCGGU-AGUUCG---UGC- -5'
28005 3' -53.6 NC_005887.1 + 23951 0.66 0.721801
Target:  5'- cGGCGCcgcGG-CGuAGGCCAUCGGGUucGCGa -3'
miRNA:   3'- -UUGCGu--CCaGC-UUCGGUAGUUCG--UGC- -5'
28005 3' -53.6 NC_005887.1 + 2094 0.66 0.721801
Target:  5'- cAGCgGCAGcacgaacauauuGcCGAAGCCGUCGcucGGCACGc -3'
miRNA:   3'- -UUG-CGUC------------CaGCUUCGGUAGU---UCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.