miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28005 5' -58.5 NC_005887.1 + 34686 0.66 0.483003
Target:  5'- gUUGuCGAGCAGCaGCGGG-CGGCc-- -3'
miRNA:   3'- aAGC-GCUCGUUGcCGCCCaGCUGcuc -5'
28005 5' -58.5 NC_005887.1 + 13664 0.66 0.481985
Target:  5'- uUUCGCGGGCGugAUcGCGGGUugucgucUGGCGAa -3'
miRNA:   3'- -AAGCGCUCGU--UGcCGCCCA-------GCUGCUc -5'
28005 5' -58.5 NC_005887.1 + 39430 0.66 0.472874
Target:  5'- cUUGCGcAGCuugGCGGCGGcGUCGuucGCGGc -3'
miRNA:   3'- aAGCGC-UCGu--UGCCGCC-CAGC---UGCUc -5'
28005 5' -58.5 NC_005887.1 + 22721 0.66 0.466848
Target:  5'- -cCGUGAGCGAgauCGGCGGGacacugcucgcgaagUCgGACGAc -3'
miRNA:   3'- aaGCGCUCGUU---GCCGCCC---------------AG-CUGCUc -5'
28005 5' -58.5 NC_005887.1 + 9077 0.66 0.461857
Target:  5'- -gCGCcGGCuGCGGCGGGaCGaaguuucGCGAGa -3'
miRNA:   3'- aaGCGcUCGuUGCCGCCCaGC-------UGCUC- -5'
28005 5' -58.5 NC_005887.1 + 24941 0.66 0.459868
Target:  5'- aUCGCGAcGCGuGCGcGCGGGcCGccuugcgcgcggccGCGAGg -3'
miRNA:   3'- aAGCGCU-CGU-UGC-CGCCCaGC--------------UGCUC- -5'
28005 5' -58.5 NC_005887.1 + 41928 0.66 0.443153
Target:  5'- --aGCGcAGCAACaGCGGG-CGGCGcGg -3'
miRNA:   3'- aagCGC-UCGUUGcCGCCCaGCUGCuC- -5'
28005 5' -58.5 NC_005887.1 + 19811 0.67 0.433481
Target:  5'- -gCGCGAccggaAACGGgGGcGUCGACGAc -3'
miRNA:   3'- aaGCGCUcg---UUGCCgCC-CAGCUGCUc -5'
28005 5' -58.5 NC_005887.1 + 10221 0.67 0.414513
Target:  5'- gUUGCGAGCAGCGcu--GUCGACGAc -3'
miRNA:   3'- aAGCGCUCGUUGCcgccCAGCUGCUc -5'
28005 5' -58.5 NC_005887.1 + 34935 0.67 0.405222
Target:  5'- -aCGa-GGCGGCGGCGGGUgCGACc-- -3'
miRNA:   3'- aaGCgcUCGUUGCCGCCCA-GCUGcuc -5'
28005 5' -58.5 NC_005887.1 + 13384 0.68 0.378152
Target:  5'- cUCGCGcugaaggccGGC-GCGGCGGacGUCGGCGGc -3'
miRNA:   3'- aAGCGC---------UCGuUGCCGCC--CAGCUGCUc -5'
28005 5' -58.5 NC_005887.1 + 37888 0.68 0.378152
Target:  5'- cUUCGCG-GCAGC--CGGGUCGaacuGCGAGa -3'
miRNA:   3'- -AAGCGCuCGUUGccGCCCAGC----UGCUC- -5'
28005 5' -58.5 NC_005887.1 + 28572 0.68 0.360792
Target:  5'- gUCGCcgcccGCugcGCGGaCGcGGUCGACGAGg -3'
miRNA:   3'- aAGCGcu---CGu--UGCC-GC-CCAGCUGCUC- -5'
28005 5' -58.5 NC_005887.1 + 13912 0.68 0.360792
Target:  5'- aUUCGUG-GC-ACGuacGCGGuGUCGACGGGg -3'
miRNA:   3'- -AAGCGCuCGuUGC---CGCC-CAGCUGCUC- -5'
28005 5' -58.5 NC_005887.1 + 18914 0.68 0.360792
Target:  5'- --aGCGGcGgGAUGGCGGGcggcugCGACGAGc -3'
miRNA:   3'- aagCGCU-CgUUGCCGCCCa-----GCUGCUC- -5'
28005 5' -58.5 NC_005887.1 + 15619 0.68 0.352324
Target:  5'- gUCGCGcAGCAgGCGGcCGGGcUCGcCGAu -3'
miRNA:   3'- aAGCGC-UCGU-UGCC-GCCC-AGCuGCUc -5'
28005 5' -58.5 NC_005887.1 + 12648 0.68 0.352324
Target:  5'- -cCGCaGGUuACGaGUGGGUCGGCGAu -3'
miRNA:   3'- aaGCGcUCGuUGC-CGCCCAGCUGCUc -5'
28005 5' -58.5 NC_005887.1 + 12144 0.68 0.352324
Target:  5'- -cCGCGAcGCGGCguGGCuGGcCGGCGAGa -3'
miRNA:   3'- aaGCGCU-CGUUG--CCGcCCaGCUGCUC- -5'
28005 5' -58.5 NC_005887.1 + 33470 0.68 0.343996
Target:  5'- -cCGCGAGCGcguACGGCGucgcgaucUCGACGGGc -3'
miRNA:   3'- aaGCGCUCGU---UGCCGCcc------AGCUGCUC- -5'
28005 5' -58.5 NC_005887.1 + 38640 0.68 0.335812
Target:  5'- aUCGCGGuCGGCGcGCGGcUCGACGGc -3'
miRNA:   3'- aAGCGCUcGUUGC-CGCCcAGCUGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.