miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28006 5' -56.6 NC_005887.1 + 40105 0.66 0.53678
Target:  5'- uGCUGUGGGACGA-GCCGcaggacgccuacAGCgUGCg- -3'
miRNA:   3'- uUGACGCUCUGCUaCGGC------------UCG-ACGac -5'
28006 5' -56.6 NC_005887.1 + 32629 0.66 0.53678
Target:  5'- cAGCUGCcGGGC---GuuGAGCUGCUGc -3'
miRNA:   3'- -UUGACGcUCUGcuaCggCUCGACGAC- -5'
28006 5' -56.6 NC_005887.1 + 356 0.66 0.53678
Target:  5'- cGAC-GUGGGcCGcagGCCGuGCUGCUGa -3'
miRNA:   3'- -UUGaCGCUCuGCua-CGGCuCGACGAC- -5'
28006 5' -56.6 NC_005887.1 + 38252 0.66 0.51499
Target:  5'- -cCUGCGcGAacuCGAUGCCGAuCUGCg- -3'
miRNA:   3'- uuGACGCuCU---GCUACGGCUcGACGac -5'
28006 5' -56.6 NC_005887.1 + 7655 0.66 0.504229
Target:  5'- ---aGCGcGACGAcgGCCGcccGCUGCUGc -3'
miRNA:   3'- uugaCGCuCUGCUa-CGGCu--CGACGAC- -5'
28006 5' -56.6 NC_005887.1 + 17628 0.66 0.493566
Target:  5'- cGCUGCGcacGACGGUcagcGCCGugaAGCUGCa- -3'
miRNA:   3'- uUGACGCu--CUGCUA----CGGC---UCGACGac -5'
28006 5' -56.6 NC_005887.1 + 1418 0.67 0.472561
Target:  5'- cAGCgGCaAGACGAacgCGAGCUGCUGg -3'
miRNA:   3'- -UUGaCGcUCUGCUacgGCUCGACGAC- -5'
28006 5' -56.6 NC_005887.1 + 17429 0.67 0.452015
Target:  5'- ---cGCGAucgacaACGGUGCCGAuccgGCUGCUGc -3'
miRNA:   3'- uugaCGCUc-----UGCUACGGCU----CGACGAC- -5'
28006 5' -56.6 NC_005887.1 + 14985 0.67 0.452015
Target:  5'- ----uCGAGACGAUGCCGAcGCUcgucugcgcgccGCUGc -3'
miRNA:   3'- uugacGCUCUGCUACGGCU-CGA------------CGAC- -5'
28006 5' -56.6 NC_005887.1 + 5014 0.67 0.441927
Target:  5'- uGCgGCGAccGAUGccaGUGCCGGcGCUGCUGc -3'
miRNA:   3'- uUGaCGCU--CUGC---UACGGCU-CGACGAC- -5'
28006 5' -56.6 NC_005887.1 + 21161 0.68 0.384218
Target:  5'- cGACgGCGuuuuCGAUGCCGAGUUGUUc -3'
miRNA:   3'- -UUGaCGCucu-GCUACGGCUCGACGAc -5'
28006 5' -56.6 NC_005887.1 + 29187 0.68 0.384218
Target:  5'- cGCUGCGAGgaucuGCGcgGCCuuaAGCUGCg- -3'
miRNA:   3'- uUGACGCUC-----UGCuaCGGc--UCGACGac -5'
28006 5' -56.6 NC_005887.1 + 7024 0.69 0.357297
Target:  5'- -cCUGgGAGACGGUGUCGGGUgaacGCg- -3'
miRNA:   3'- uuGACgCUCUGCUACGGCUCGa---CGac -5'
28006 5' -56.6 NC_005887.1 + 30809 0.69 0.348623
Target:  5'- ---cGCGcuGCGc-GCCGAGCUGCUGa -3'
miRNA:   3'- uugaCGCucUGCuaCGGCUCGACGAC- -5'
28006 5' -56.6 NC_005887.1 + 11431 0.69 0.348623
Target:  5'- cGCUGUGcacaAGGCGAUGCCGcGCUGg-- -3'
miRNA:   3'- uUGACGC----UCUGCUACGGCuCGACgac -5'
28006 5' -56.6 NC_005887.1 + 23430 0.69 0.340099
Target:  5'- cGCUGCGAGAuuCGGUGagcgcugCGGGCUGCc- -3'
miRNA:   3'- uUGACGCUCU--GCUACg------GCUCGACGac -5'
28006 5' -56.6 NC_005887.1 + 2535 0.69 0.323509
Target:  5'- cGCUGCGcaAGGCGcUGUCGGGCgGCUa -3'
miRNA:   3'- uUGACGC--UCUGCuACGGCUCGaCGAc -5'
28006 5' -56.6 NC_005887.1 + 26460 0.74 0.165547
Target:  5'- cAGCUGCGcGuCGAgcgcaCCGAGCUGCUGg -3'
miRNA:   3'- -UUGACGCuCuGCUac---GGCUCGACGAC- -5'
28006 5' -56.6 NC_005887.1 + 37906 0.96 0.003616
Target:  5'- gAACUGCGAGACGAUGCCG-GCUGCUGc -3'
miRNA:   3'- -UUGACGCUCUGCUACGGCuCGACGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.