miRNA: 3'- gCGGGU-AGuCUGG-GA--GCGGCAGACGC- -5'
miRNA: 3'- -GCGGGuAGU-CUGGGaGCGGCaGAcGC- -5'
miRNA: 3'- -GCGGGUaGUC---UGGGAGCGGCaga--CGC- -5'
miRNA: 3'- -GCGGGUAGUCUGGg-AGCgGCAGa-CGc -5'
miRNA: 3'- -GCGGGUAGUCUGGGAGCGGCAGACGC- -5'
Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28007 | 3' | -59.8 | NC_005887.1 | + | 29171 | 0.66 | 0.410343 |
|
Target: 5'- gGCCUGcUC-GACCgCUccCGCUGUCUGCGc -3' miRNA: 3'- gCGGGU-AGuCUGG-GA--GCGGCAGACGC- -5' |
|||||||
| 28007 | 3' | -59.8 | NC_005887.1 | + | 36525 | 0.66 | 0.428947 |
|
Target: 5'- uCGCCCuUCGcGACCCgCGCCGaCU-CGa -3' miRNA: 3'- -GCGGGuAGU-CUGGGaGCGGCaGAcGC- -5' |
|||||||
| 28007 | 3' | -59.8 | NC_005887.1 | + | 24974 | 0.66 | 0.438434 |
|
Target: 5'- gCGUUCAaCAGcgaGCCCUCGCCGaacugGCGg -3' miRNA: 3'- -GCGGGUaGUC---UGGGAGCGGCaga--CGC- -5' |
|||||||
| 28007 | 3' | -59.8 | NC_005887.1 | + | 20701 | 0.66 | 0.438434 |
|
Target: 5'- aCGCCCGUCAGAUUggUCGgCGUCggGUa -3' miRNA: 3'- -GCGGGUAGUCUGGg-AGCgGCAGa-CGc -5' |
|||||||
| 28007 | 3' | -59.8 | NC_005887.1 | + | 37668 | 1.08 | 0.000354 |
|
Target: 5'- gCGCCCAUCAGACCCUCGCCGUCUGCGc -3' miRNA: 3'- -GCGGGUAGUCUGGGAGCGGCAGACGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home