miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28008 3' -55.1 NC_005887.1 + 17741 0.69 0.512338
Target:  5'- --aCGCUCGGCACgGCCGcgcGGCUgaugGCGCc -3'
miRNA:   3'- ggaGCGGGCUGUG-UGGC---UUGAa---CGCG- -5'
28008 3' -55.1 NC_005887.1 + 12349 0.7 0.454866
Target:  5'- gCUCGCCggccaggcggugacgUGGCAgGCCGAGCagcaccGCGCa -3'
miRNA:   3'- gGAGCGG---------------GCUGUgUGGCUUGaa----CGCG- -5'
28008 3' -55.1 NC_005887.1 + 35618 0.7 0.460861
Target:  5'- uUCUCGCCCGGguugaagucgcuCGgGCUGAGCggUGCGa -3'
miRNA:   3'- -GGAGCGGGCU------------GUgUGGCUUGa-ACGCg -5'
28008 3' -55.1 NC_005887.1 + 37951 0.69 0.481139
Target:  5'- -aUCaGCCCGcauccguuACGCGCCaGAAUUUGUGCu -3'
miRNA:   3'- ggAG-CGGGC--------UGUGUGG-CUUGAACGCG- -5'
28008 3' -55.1 NC_005887.1 + 258 0.69 0.49144
Target:  5'- gCCUCGaCCUGAU--GCCGAaagACgugGCGCg -3'
miRNA:   3'- -GGAGC-GGGCUGugUGGCU---UGaa-CGCG- -5'
28008 3' -55.1 NC_005887.1 + 2508 0.69 0.501841
Target:  5'- gCCU-GCUCGuGCAC-CCGGACUgccgcacgcUGCGCa -3'
miRNA:   3'- -GGAgCGGGC-UGUGuGGCUUGA---------ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 14016 0.69 0.501841
Target:  5'- gCCUcCGCaaccgCCGGCGCGCCGccg--GCGCa -3'
miRNA:   3'- -GGA-GCG-----GGCUGUGUGGCuugaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 6295 0.69 0.512338
Target:  5'- gUUCGCaCCGGucugccCACACCG-ACgugGCGCa -3'
miRNA:   3'- gGAGCG-GGCU------GUGUGGCuUGaa-CGCG- -5'
28008 3' -55.1 NC_005887.1 + 4619 0.69 0.512338
Target:  5'- gCUCGCCgCGGCGCcggugGCCGccg--GCGCg -3'
miRNA:   3'- gGAGCGG-GCUGUG-----UGGCuugaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 31134 0.7 0.450893
Target:  5'- gCUUGCCgGGCAgGCCG----UGCGCa -3'
miRNA:   3'- gGAGCGGgCUGUgUGGCuugaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 8208 0.71 0.41225
Target:  5'- aCCcgCGCaCCGACACGCgCGGGCUguucaGCa -3'
miRNA:   3'- -GGa-GCG-GGCUGUGUG-GCUUGAacg--CG- -5'
28008 3' -55.1 NC_005887.1 + 28276 0.71 0.41225
Target:  5'- ---aGCaucauCGGCACGCCGAGCgcGCGCa -3'
miRNA:   3'- ggagCGg----GCUGUGUGGCUUGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 36293 0.76 0.210029
Target:  5'- aCUCGUCCGGUugGCCGAuC-UGCGCg -3'
miRNA:   3'- gGAGCGGGCUGugUGGCUuGaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 28159 0.75 0.239083
Target:  5'- aCCUCGCacgCCGACuggucgucgagcaACAUCGGGCUgUGCGCc -3'
miRNA:   3'- -GGAGCG---GGCUG-------------UGUGGCUUGA-ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 16143 0.74 0.252531
Target:  5'- aCCcCGCCaaccacCGGCGCGCCGAG--UGCGCg -3'
miRNA:   3'- -GGaGCGG------GCUGUGUGGCUUgaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 9733 0.73 0.287049
Target:  5'- --aCGCCCGGCA-GCUGAacaaGCUUGCGUg -3'
miRNA:   3'- ggaGCGGGCUGUgUGGCU----UGAACGCG- -5'
28008 3' -55.1 NC_005887.1 + 12212 0.73 0.287049
Target:  5'- gCCgCGCCgGGCGCGCCGGAUUUcaCGCc -3'
miRNA:   3'- -GGaGCGGgCUGUGUGGCUUGAAc-GCG- -5'
28008 3' -55.1 NC_005887.1 + 39992 0.73 0.301862
Target:  5'- gCCgUgGCCCGACAUGCaGGACgucgcggUGCGCa -3'
miRNA:   3'- -GG-AgCGGGCUGUGUGgCUUGa------ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 35363 0.72 0.366939
Target:  5'- --aCGCCCGGCAcCACgCGGGCcUGCaGCa -3'
miRNA:   3'- ggaGCGGGCUGU-GUG-GCUUGaACG-CG- -5'
28008 3' -55.1 NC_005887.1 + 14409 0.71 0.393712
Target:  5'- aCCU-GUCCGACACguucaaGCCGGACccgacGCGCg -3'
miRNA:   3'- -GGAgCGGGCUGUG------UGGCUUGaa---CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.