miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28008 3' -55.1 NC_005887.1 + 18900 0.66 0.676324
Target:  5'- -gUCGCCCGGCAC-CgGcAGCccgcaGCGCu -3'
miRNA:   3'- ggAGCGGGCUGUGuGgC-UUGaa---CGCG- -5'
28008 3' -55.1 NC_005887.1 + 26333 0.66 0.676324
Target:  5'- gCCgUGgCCGGCGCugGCCGGG--UGCGCg -3'
miRNA:   3'- -GGaGCgGGCUGUG--UGGCUUgaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 26734 0.66 0.676324
Target:  5'- ---aGCCCGGC-CGCCu-GC-UGCGCg -3'
miRNA:   3'- ggagCGGGCUGuGUGGcuUGaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 27135 0.66 0.676324
Target:  5'- aCUCGUCggCGAuCACgcgGCCGAACggccacggGCGCg -3'
miRNA:   3'- gGAGCGG--GCU-GUG---UGGCUUGaa------CGCG- -5'
28008 3' -55.1 NC_005887.1 + 12035 0.66 0.673025
Target:  5'- aUCUCGUguucgagaacgugaUCGGCcugACugCGAACgucgUGCGCg -3'
miRNA:   3'- -GGAGCG--------------GGCUG---UGugGCUUGa---ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 30707 0.66 0.665314
Target:  5'- aCCgCGUCUGcaACGCGUCGAGCUcggcauUGCGCa -3'
miRNA:   3'- -GGaGCGGGC--UGUGUGGCUUGA------ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 4887 0.66 0.665314
Target:  5'- -aUCGCauCCGGCGCACUGcaAACc-GCGCa -3'
miRNA:   3'- ggAGCG--GGCUGUGUGGC--UUGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 7120 0.66 0.665314
Target:  5'- gCUCaucaGCCCcACGCagGCCGAcaaGCUgcUGCGCa -3'
miRNA:   3'- gGAG----CGGGcUGUG--UGGCU---UGA--ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 13819 0.66 0.665314
Target:  5'- ---aGCCCGGCGCGCgUGAGCgUGCc- -3'
miRNA:   3'- ggagCGGGCUGUGUG-GCUUGaACGcg -5'
28008 3' -55.1 NC_005887.1 + 1310 0.66 0.665314
Target:  5'- uUCUCgaGCUCGACcuGCACCGcGCg-GCGCc -3'
miRNA:   3'- -GGAG--CGGGCUG--UGUGGCuUGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 15373 0.66 0.665314
Target:  5'- --aCGCCCGAgcaggucgACGCCGcGCUgaucGCGCg -3'
miRNA:   3'- ggaGCGGGCUg-------UGUGGCuUGAa---CGCG- -5'
28008 3' -55.1 NC_005887.1 + 30105 0.66 0.665314
Target:  5'- gCUUCGa-CGGCuACGCCGAACgcccGUGCa -3'
miRNA:   3'- -GGAGCggGCUG-UGUGGCUUGaa--CGCG- -5'
28008 3' -55.1 NC_005887.1 + 2428 0.66 0.665314
Target:  5'- gCC-CGCgCCGACgaaugACACCucGC-UGCGCu -3'
miRNA:   3'- -GGaGCG-GGCUG-----UGUGGcuUGaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 4885 0.66 0.665314
Target:  5'- gCUCGCgaCGAUgguCGCCGAggGCcgGCGCg -3'
miRNA:   3'- gGAGCGg-GCUGu--GUGGCU--UGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 32749 0.66 0.665314
Target:  5'- gCUCGCgUG-CGCGCCG-GCgcGCGCc -3'
miRNA:   3'- gGAGCGgGCuGUGUGGCuUGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 28894 0.66 0.654272
Target:  5'- gCCUgcgCGCCCGuCAggaugaacgUGCUGAGCggUGCGCc -3'
miRNA:   3'- -GGA---GCGGGCuGU---------GUGGCUUGa-ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 11825 0.67 0.647636
Target:  5'- gUCUCGgCCGACGgccgccUACgCGGGCUgaugcaguuuugcggUGCGCa -3'
miRNA:   3'- -GGAGCgGGCUGU------GUG-GCUUGA---------------ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 3883 0.67 0.643209
Target:  5'- ---aGCCCGGCAUacgacgccauGCCGGAUgUGCGg -3'
miRNA:   3'- ggagCGGGCUGUG----------UGGCUUGaACGCg -5'
28008 3' -55.1 NC_005887.1 + 1677 0.67 0.643209
Target:  5'- aUCgCGCUCGAuCGCcCCGAGCacgaGCGCa -3'
miRNA:   3'- -GGaGCGGGCU-GUGuGGCUUGaa--CGCG- -5'
28008 3' -55.1 NC_005887.1 + 205 0.67 0.643209
Target:  5'- gUUCGCCCcGCugcuCugCGAAUgcGCGCc -3'
miRNA:   3'- gGAGCGGGcUGu---GugGCUUGaaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.