Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28009 | 3' | -49.5 | NC_005887.1 | + | 25512 | 0.74 | 0.522583 |
Target: 5'- gGCGCGG-CGggUgGCGgcauaaUCGUCGCCGc -3' miRNA: 3'- -CGCGCUaGCuuA-UGCaa----AGCAGCGGU- -5' |
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28009 | 3' | -49.5 | NC_005887.1 | + | 26831 | 0.66 | 0.946895 |
Target: 5'- cGCGUGcgCGA--GCGggcgCGUCuGCCGg -3' miRNA: 3'- -CGCGCuaGCUuaUGCaaa-GCAG-CGGU- -5' |
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28009 | 3' | -49.5 | NC_005887.1 | + | 3249 | 0.66 | 0.941861 |
Target: 5'- cGCGcCGcUCGcgcUGCGcaacUUCGUCGCCGc -3' miRNA: 3'- -CGC-GCuAGCuu-AUGCa---AAGCAGCGGU- -5' |
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28009 | 3' | -49.5 | NC_005887.1 | + | 41340 | 0.66 | 0.930892 |
Target: 5'- cGC-CGGUUGAGUACGauccgcgCGcCGCCGg -3' miRNA: 3'- -CGcGCUAGCUUAUGCaaa----GCaGCGGU- -5' |
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28009 | 3' | -49.5 | NC_005887.1 | + | 40714 | 0.66 | 0.930892 |
Target: 5'- aGC-CGAUCGAAgACGacUUCGaggUCGCCGc -3' miRNA: 3'- -CGcGCUAGCUUaUGCa-AAGC---AGCGGU- -5' |
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28009 | 3' | -49.5 | NC_005887.1 | + | 28047 | 0.66 | 0.930892 |
Target: 5'- gGCGUGAUCGAGcagGCGc--UG-CGCCAc -3' miRNA: 3'- -CGCGCUAGCUUa--UGCaaaGCaGCGGU- -5' |
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28009 | 3' | -49.5 | NC_005887.1 | + | 18628 | 0.66 | 0.924954 |
Target: 5'- aGCGCGAUCGGcgGCccgcugcugUCGaCGCUg -3' miRNA: 3'- -CGCGCUAGCUuaUGcaa------AGCaGCGGu -5' |
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28009 | 3' | -49.5 | NC_005887.1 | + | 11179 | 0.67 | 0.914822 |
Target: 5'- aGCuGCGAUCGcAUGgGcugaacaucuaggcUUCGUCGCCGa -3' miRNA: 3'- -CG-CGCUAGCuUAUgCa-------------AAGCAGCGGU- -5' |
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28009 | 3' | -49.5 | NC_005887.1 | + | 21042 | 0.67 | 0.905324 |
Target: 5'- -gGCGAUCGucucgACaggUUCGUCGUCGg -3' miRNA: 3'- cgCGCUAGCuua--UGca-AAGCAGCGGU- -5' |
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28009 | 3' | -49.5 | NC_005887.1 | + | 21990 | 0.71 | 0.727377 |
Target: 5'- cGCGCucGUCGggUGCGUUaagCGUC-CCGa -3' miRNA: 3'- -CGCGc-UAGCuuAUGCAAa--GCAGcGGU- -5' |
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28009 | 3' | -49.5 | NC_005887.1 | + | 39789 | 0.71 | 0.727377 |
Target: 5'- cGCGcCGAUCGu-UGCGcg-CGUCGUCAc -3' miRNA: 3'- -CGC-GCUAGCuuAUGCaaaGCAGCGGU- -5' |
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28009 | 3' | -49.5 | NC_005887.1 | + | 10188 | 0.7 | 0.791645 |
Target: 5'- aCGCGAacgguuucgUCGAGUGCGUcgCGUCgauGCCc -3' miRNA: 3'- cGCGCU---------AGCUUAUGCAaaGCAG---CGGu -5' |
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28009 | 3' | -49.5 | NC_005887.1 | + | 31511 | 0.68 | 0.866735 |
Target: 5'- cGCGCGGcgCGGAUgaACGcagUUGUCGCUu -3' miRNA: 3'- -CGCGCUa-GCUUA--UGCaa-AGCAGCGGu -5' |
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28009 | 3' | -49.5 | NC_005887.1 | + | 40790 | 0.68 | 0.883023 |
Target: 5'- -gGCGGUCGAGguuCGUggCGgcgacgCGCCGc -3' miRNA: 3'- cgCGCUAGCUUau-GCAaaGCa-----GCGGU- -5' |
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28009 | 3' | -49.5 | NC_005887.1 | + | 37114 | 0.67 | 0.890746 |
Target: 5'- -gGCGAUCGc--GCGgc-CGUCGCCc -3' miRNA: 3'- cgCGCUAGCuuaUGCaaaGCAGCGGu -5' |
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28009 | 3' | -49.5 | NC_005887.1 | + | 35006 | 1.12 | 0.002106 |
Target: 5'- aGCGCGAUCGAAUACGUUUCGUCGCCAg -3' miRNA: 3'- -CGCGCUAGCUUAUGCAAAGCAGCGGU- -5' |
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28009 | 3' | -49.5 | NC_005887.1 | + | 9133 | 0.66 | 0.946405 |
Target: 5'- gGCGCGAcCGAGUgccagugcggcGCGUUcaucuggacgggcUCGUCcgGCCGc -3' miRNA: 3'- -CGCGCUaGCUUA-----------UGCAA-------------AGCAG--CGGU- -5' |
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28009 | 3' | -49.5 | NC_005887.1 | + | 27384 | 0.66 | 0.936528 |
Target: 5'- uGCGCGGcguaggcgUCGAGuUGCGgcgCGUCGUa- -3' miRNA: 3'- -CGCGCU--------AGCUU-AUGCaaaGCAGCGgu -5' |
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28009 | 3' | -49.5 | NC_005887.1 | + | 6304 | 0.66 | 0.936528 |
Target: 5'- aGCGCG-UCGAGgccuUGCGccUCGccggCGCCGa -3' miRNA: 3'- -CGCGCuAGCUU----AUGCaaAGCa---GCGGU- -5' |
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28009 | 3' | -49.5 | NC_005887.1 | + | 18851 | 0.66 | 0.930892 |
Target: 5'- aGCGCGGcCGAAcACGUcggcaagcagaUcaagggCGUCGCCGg -3' miRNA: 3'- -CGCGCUaGCUUaUGCA-----------Aa-----GCAGCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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