miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28009 3' -49.5 NC_005887.1 + 37114 0.67 0.890746
Target:  5'- -gGCGAUCGc--GCGgc-CGUCGCCc -3'
miRNA:   3'- cgCGCUAGCuuaUGCaaaGCAGCGGu -5'
28009 3' -49.5 NC_005887.1 + 6031 0.67 0.890746
Target:  5'- ---gGAUCGAGUGCGcggCGUCGaCCGc -3'
miRNA:   3'- cgcgCUAGCUUAUGCaaaGCAGC-GGU- -5'
28009 3' -49.5 NC_005887.1 + 40790 0.68 0.883023
Target:  5'- -gGCGGUCGAGguuCGUggCGgcgacgCGCCGc -3'
miRNA:   3'- cgCGCUAGCUUau-GCAaaGCa-----GCGGU- -5'
28009 3' -49.5 NC_005887.1 + 25408 0.68 0.875017
Target:  5'- cGCGCGGUUGAAgcgcucACGcaUCG-CGCCc -3'
miRNA:   3'- -CGCGCUAGCUUa-----UGCaaAGCaGCGGu -5'
28009 3' -49.5 NC_005887.1 + 31511 0.68 0.866735
Target:  5'- cGCGCGGcgCGGAUgaACGcagUUGUCGCUu -3'
miRNA:   3'- -CGCGCUa-GCUUA--UGCaa-AGCAGCGGu -5'
28009 3' -49.5 NC_005887.1 + 29926 0.68 0.849378
Target:  5'- uCGCGAUCGcgcgcgcGCGgugUCGUUGCCc -3'
miRNA:   3'- cGCGCUAGCuua----UGCaa-AGCAGCGGu -5'
28009 3' -49.5 NC_005887.1 + 32973 0.69 0.831021
Target:  5'- cGCGcCGAUCGAcccGUAUucgUCuGUCGCCGa -3'
miRNA:   3'- -CGC-GCUAGCU---UAUGcaaAG-CAGCGGU- -5'
28009 3' -49.5 NC_005887.1 + 29019 0.69 0.821493
Target:  5'- uGCGCGG-CGAgauccgcgAUGCGgccggCGUUGCCGa -3'
miRNA:   3'- -CGCGCUaGCU--------UAUGCaaa--GCAGCGGU- -5'
28009 3' -49.5 NC_005887.1 + 39456 0.69 0.811746
Target:  5'- uCGCGG-CGGccgACGUguccgUCGUCGCCu -3'
miRNA:   3'- cGCGCUaGCUua-UGCAa----AGCAGCGGu -5'
28009 3' -49.5 NC_005887.1 + 32867 0.69 0.801793
Target:  5'- cCGgGGUCGGccGgGUcgUUCGUCGCCAc -3'
miRNA:   3'- cGCgCUAGCUuaUgCA--AAGCAGCGGU- -5'
28009 3' -49.5 NC_005887.1 + 17985 0.7 0.791645
Target:  5'- aGCGCGGcUCGugg----UUCGUCGCCGa -3'
miRNA:   3'- -CGCGCU-AGCuuaugcaAAGCAGCGGU- -5'
28009 3' -49.5 NC_005887.1 + 10188 0.7 0.791645
Target:  5'- aCGCGAacgguuucgUCGAGUGCGUcgCGUCgauGCCc -3'
miRNA:   3'- cGCGCU---------AGCUUAUGCAaaGCAG---CGGu -5'
28009 3' -49.5 NC_005887.1 + 38651 0.7 0.749357
Target:  5'- cGCGCGGcUCGAcgGCGUgguagaaGaUCGCCGa -3'
miRNA:   3'- -CGCGCU-AGCUuaUGCAaag----C-AGCGGU- -5'
28009 3' -49.5 NC_005887.1 + 21990 0.71 0.727377
Target:  5'- cGCGCucGUCGggUGCGUUaagCGUC-CCGa -3'
miRNA:   3'- -CGCGc-UAGCuuAUGCAAa--GCAGcGGU- -5'
28009 3' -49.5 NC_005887.1 + 39789 0.71 0.727377
Target:  5'- cGCGcCGAUCGu-UGCGcg-CGUCGUCAc -3'
miRNA:   3'- -CGC-GCUAGCuuAUGCaaaGCAGCGGU- -5'
28009 3' -49.5 NC_005887.1 + 1440 0.71 0.693657
Target:  5'- uGCGCGcgCGGuagcccuucgGCGgcUCGUCGUCAc -3'
miRNA:   3'- -CGCGCuaGCUua--------UGCaaAGCAGCGGU- -5'
28009 3' -49.5 NC_005887.1 + 24767 0.73 0.601767
Target:  5'- cGCGgGAUUGAcggGCGUgUUCGUCGCg- -3'
miRNA:   3'- -CGCgCUAGCUua-UGCA-AAGCAGCGgu -5'
28009 3' -49.5 NC_005887.1 + 1404 0.73 0.601767
Target:  5'- -aGCGGUCGAgcAUGCGcucggCGUUGCCGa -3'
miRNA:   3'- cgCGCUAGCU--UAUGCaaa--GCAGCGGU- -5'
28009 3' -49.5 NC_005887.1 + 27051 0.74 0.55614
Target:  5'- aCGCGGUCGAgguAUGCGgcagucUCGuUCGCCGg -3'
miRNA:   3'- cGCGCUAGCU---UAUGCaa----AGC-AGCGGU- -5'
28009 3' -49.5 NC_005887.1 + 25512 0.74 0.522583
Target:  5'- gGCGCGG-CGggUgGCGgcauaaUCGUCGCCGc -3'
miRNA:   3'- -CGCGCUaGCuuA-UGCaa----AGCAGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.