Results 81 - 100 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28009 | 5' | -59.7 | NC_005887.1 | + | 16056 | 0.67 | 0.42391 |
Target: 5'- cGGCGGCaacauccuuGCGGucuuCGGCcACugGugGAa -3' miRNA: 3'- -CCGCCGc--------UGCCu---GCCGcUGugCugCU- -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 29770 | 0.67 | 0.421153 |
Target: 5'- cGGCcgGGuCGGCGGAcaccaugcgcaugcCGGCGGCcguCGACGc -3' miRNA: 3'- -CCG--CC-GCUGCCU--------------GCCGCUGu--GCUGCu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 17668 | 0.67 | 0.414762 |
Target: 5'- aGGCGGuCGA-GGAUGccggccGCGGCugGACa- -3' miRNA: 3'- -CCGCC-GCUgCCUGC------CGCUGugCUGcu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 13953 | 0.67 | 0.405736 |
Target: 5'- cGGCuGCGACGuGC-GCGugACGACa- -3' miRNA: 3'- -CCGcCGCUGCcUGcCGCugUGCUGcu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 13780 | 0.67 | 0.396835 |
Target: 5'- cGCGuccGCGcaGCGGGCGGCGACGCcuACa- -3' miRNA: 3'- cCGC---CGC--UGCCUGCCGCUGUGc-UGcu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 11932 | 0.67 | 0.396835 |
Target: 5'- cGuCGGCcuGAUGGugGGCGAacuCGGCGu -3' miRNA: 3'- cC-GCCG--CUGCCugCCGCUgu-GCUGCu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 34298 | 0.66 | 0.481202 |
Target: 5'- uGCGGCugacuGCGGGCGGCaACGgGuaGCGAg -3' miRNA: 3'- cCGCCGc----UGCCUGCCGcUGUgC--UGCU- -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 10740 | 0.66 | 0.481202 |
Target: 5'- -aUGGCGACauGGAauCGGacuGGCGCGGCGGg -3' miRNA: 3'- ccGCCGCUG--CCU--GCCg--CUGUGCUGCU- -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 17400 | 0.66 | 0.481202 |
Target: 5'- cGCuGGuCGAUcacGuCGGCGGCAUGGCGAa -3' miRNA: 3'- cCG-CC-GCUGc--CuGCCGCUGUGCUGCU- -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 9350 | 0.66 | 0.471384 |
Target: 5'- cGGCaccgGGCagGACGaauCGGCGACA-GACGAa -3' miRNA: 3'- -CCG----CCG--CUGCcu-GCCGCUGUgCUGCU- -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 27405 | 0.66 | 0.471384 |
Target: 5'- uGCGGCGcguCGuACGGCagcGCGCGGCGu -3' miRNA: 3'- cCGCCGCu--GCcUGCCGc--UGUGCUGCu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 39399 | 0.66 | 0.471384 |
Target: 5'- cGGCGaG-GAUGGucGCGGCGGugcCGCGGCGc -3' miRNA: 3'- -CCGC-CgCUGCC--UGCCGCU---GUGCUGCu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 11007 | 0.66 | 0.461669 |
Target: 5'- cGUGGgccaucgaCGACGGccCGGuCGGCACGugGGa -3' miRNA: 3'- cCGCC--------GCUGCCu-GCC-GCUGUGCugCU- -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 26352 | 0.66 | 0.45206 |
Target: 5'- cGGCucGCGGCGGgucuGCGcGCG-CACGACa- -3' miRNA: 3'- -CCGc-CGCUGCC----UGC-CGCuGUGCUGcu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 9208 | 0.66 | 0.442562 |
Target: 5'- cGCGGC-ACGGuCGGCugcuucuaccGACgcaACGGCGAg -3' miRNA: 3'- cCGCCGcUGCCuGCCG----------CUG---UGCUGCU- -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 38635 | 0.66 | 0.442562 |
Target: 5'- cGCGGaucGCGGuCGGCG-CGCGGCu- -3' miRNA: 3'- cCGCCgc-UGCCuGCCGCuGUGCUGcu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 15502 | 0.66 | 0.442562 |
Target: 5'- cGGCGGCaACGGcuacCGGCaGACGCGcCc- -3' miRNA: 3'- -CCGCCGcUGCCu---GCCG-CUGUGCuGcu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 15096 | 0.66 | 0.442562 |
Target: 5'- -uUGGCGacGCGGGcCGGCG-CGCGAUGc -3' miRNA: 3'- ccGCCGC--UGCCU-GCCGCuGUGCUGCu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 7574 | 0.66 | 0.45206 |
Target: 5'- uGGCaGGCGuaucCGGACGGCauCGCGuaaGCGGc -3' miRNA: 3'- -CCG-CCGCu---GCCUGCCGcuGUGC---UGCU- -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 21230 | 0.66 | 0.478246 |
Target: 5'- cGUGGCGuuGGcgagcaccguguuuGCGGCGAcCGCGcCGAu -3' miRNA: 3'- cCGCCGCugCC--------------UGCCGCU-GUGCuGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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