miRNA display CGI


Results 81 - 100 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28009 5' -59.7 NC_005887.1 + 24604 0.67 0.414762
Target:  5'- cGCGGCGAUGaucuuGCGGCcGcACGCGugGu -3'
miRNA:   3'- cCGCCGCUGCc----UGCCG-C-UGUGCugCu -5'
28009 5' -59.7 NC_005887.1 + 15549 0.67 0.42391
Target:  5'- --gGGCGACGacuCGGCGcGCGCGACc- -3'
miRNA:   3'- ccgCCGCUGCcu-GCCGC-UGUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 30948 0.67 0.42391
Target:  5'- cGGCGGUGAUGu-CGGCGccCGCGuACGu -3'
miRNA:   3'- -CCGCCGCUGCcuGCCGCu-GUGC-UGCu -5'
28009 5' -59.7 NC_005887.1 + 18323 0.67 0.42391
Target:  5'- cGCGGCacugggGGCGcauCGGCGACauGCGACGu -3'
miRNA:   3'- cCGCCG------CUGCcu-GCCGCUG--UGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 33710 0.67 0.42391
Target:  5'- cGUGGCG-CGG-CGGuCGAucugcucgauCGCGGCGAg -3'
miRNA:   3'- cCGCCGCuGCCuGCC-GCU----------GUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 17158 0.67 0.433177
Target:  5'- cGGCgaagaucgcgaGGCGugGGAgCGcGCGAaCGCGGCc- -3'
miRNA:   3'- -CCG-----------CCGCugCCU-GC-CGCU-GUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 7574 0.66 0.45206
Target:  5'- uGGCaGGCGuaucCGGACGGCauCGCGuaaGCGGc -3'
miRNA:   3'- -CCG-CCGCu---GCCUGCCGcuGUGC---UGCU- -5'
28009 5' -59.7 NC_005887.1 + 9350 0.66 0.471384
Target:  5'- cGGCaccgGGCagGACGaauCGGCGACA-GACGAa -3'
miRNA:   3'- -CCG----CCG--CUGCcu-GCCGCUGUgCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 26208 0.68 0.379414
Target:  5'- gGGCGGCGGUGGcCGGCcugcagcuGGCGC-ACGGg -3'
miRNA:   3'- -CCGCCGCUGCCuGCCG--------CUGUGcUGCU- -5'
28009 5' -59.7 NC_005887.1 + 4625 0.68 0.362513
Target:  5'- cGCGGCGcCGGugGccgcCGGCGCGAUc- -3'
miRNA:   3'- cCGCCGCuGCCugCc---GCUGUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 32426 0.69 0.293088
Target:  5'- cGGCGGCGAUGuggccGGCGGCGAuCAgGuuGCGc -3'
miRNA:   3'- -CCGCCGCUGC-----CUGCCGCU-GUgC--UGCu -5'
28009 5' -59.7 NC_005887.1 + 17275 0.69 0.30757
Target:  5'- gGGCGaGaCGuCGGGCGGCGcCGCGcGCGc -3'
miRNA:   3'- -CCGC-C-GCuGCCUGCCGCuGUGC-UGCu -5'
28009 5' -59.7 NC_005887.1 + 36511 0.69 0.30757
Target:  5'- uGCGGuCGAccgcagcauCGGGCGGCGGCAgGuauuucGCGAa -3'
miRNA:   3'- cCGCC-GCU---------GCCUGCCGCUGUgC------UGCU- -5'
28009 5' -59.7 NC_005887.1 + 9463 0.69 0.315014
Target:  5'- aGGUGGUcACGGguACGGUGGCgACGaACGAc -3'
miRNA:   3'- -CCGCCGcUGCC--UGCCGCUG-UGC-UGCU- -5'
28009 5' -59.7 NC_005887.1 + 19809 0.69 0.315014
Target:  5'- uGGC-GCGAcCGGAaaCGGgGGCGuCGACGAc -3'
miRNA:   3'- -CCGcCGCU-GCCU--GCCgCUGU-GCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 5623 0.69 0.322594
Target:  5'- uGCgGGCGACGcGGugaaGGCGAUACG-CGAg -3'
miRNA:   3'- cCG-CCGCUGC-CUg---CCGCUGUGCuGCU- -5'
28009 5' -59.7 NC_005887.1 + 5814 0.69 0.322594
Target:  5'- cGGCGGCGAuCGaGuCGGCGcggguCGCGaaggGCGAa -3'
miRNA:   3'- -CCGCCGCU-GC-CuGCCGCu----GUGC----UGCU- -5'
28009 5' -59.7 NC_005887.1 + 9788 0.69 0.322594
Target:  5'- cGGCaugacgGGCGAUGaGugGGUGAUugGGCc- -3'
miRNA:   3'- -CCG------CCGCUGC-CugCCGCUGugCUGcu -5'
28009 5' -59.7 NC_005887.1 + 26011 0.68 0.346142
Target:  5'- gGGCGGCGuCGGG-GGCGAgGCuacCGGg -3'
miRNA:   3'- -CCGCCGCuGCCUgCCGCUgUGcu-GCU- -5'
28009 5' -59.7 NC_005887.1 + 27517 0.68 0.353443
Target:  5'- uGGCGugaauacGCGGCGGGCGGUcAUggGCGGCGc -3'
miRNA:   3'- -CCGC-------CGCUGCCUGCCGcUG--UGCUGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.