miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28009 5' -59.7 NC_005887.1 + 41816 0.73 0.158861
Target:  5'- cGGC-GCGGCGcGCGGCGGC-CGACGc -3'
miRNA:   3'- -CCGcCGCUGCcUGCCGCUGuGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 41718 0.74 0.13531
Target:  5'- aGGCGaUGACGGGCGGCGAUcCGAUc- -3'
miRNA:   3'- -CCGCcGCUGCCUGCCGCUGuGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 41597 0.74 0.14278
Target:  5'- aGCGGCGGCccaGGuGCGGCGGC-CGGCGc -3'
miRNA:   3'- cCGCCGCUG---CC-UGCCGCUGuGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 40789 0.75 0.131356
Target:  5'- cGGCGGuCGAgguuCGuGGCGGCGACGCgccgcucGACGAu -3'
miRNA:   3'- -CCGCC-GCU----GC-CUGCCGCUGUG-------CUGCU- -5'
28009 5' -59.7 NC_005887.1 + 39441 0.8 0.05748
Target:  5'- uGGCGGCGGCGucguucGCGGCGGC-CGACGu -3'
miRNA:   3'- -CCGCCGCUGCc-----UGCCGCUGuGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 39399 0.66 0.471384
Target:  5'- cGGCGaG-GAUGGucGCGGCGGugcCGCGGCGc -3'
miRNA:   3'- -CCGC-CgCUGCC--UGCCGCU---GUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 39358 0.71 0.24048
Target:  5'- aGGCGcGuUGACGGACGaagaaGCGACggACGugGAg -3'
miRNA:   3'- -CCGC-C-GCUGCCUGC-----CGCUG--UGCugCU- -5'
28009 5' -59.7 NC_005887.1 + 39092 0.71 0.221747
Target:  5'- cGCGGCGACGaaguugcgcagcGCGaGCGGCGCGGuCGAa -3'
miRNA:   3'- cCGCCGCUGCc-----------UGC-CGCUGUGCU-GCU- -5'
28009 5' -59.7 NC_005887.1 + 38635 0.66 0.442562
Target:  5'- cGCGGaucGCGGuCGGCG-CGCGGCu- -3'
miRNA:   3'- cCGCCgc-UGCCuGCCGCuGUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 37726 0.72 0.201131
Target:  5'- cGCGcCGGCGGccacCGGCGcCGCGGCGAg -3'
miRNA:   3'- cCGCcGCUGCCu---GCCGCuGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 36511 0.69 0.30757
Target:  5'- uGCGGuCGAccgcagcauCGGGCGGCGGCAgGuauuucGCGAa -3'
miRNA:   3'- cCGCC-GCU---------GCCUGCCGCUGUgC------UGCU- -5'
28009 5' -59.7 NC_005887.1 + 35121 0.7 0.286048
Target:  5'- gGGCGGgGcGCGGAucggaaucCGGCGcCACgGACGGg -3'
miRNA:   3'- -CCGCCgC-UGCCU--------GCCGCuGUG-CUGCU- -5'
28009 5' -59.7 NC_005887.1 + 35043 1.1 0.000294
Target:  5'- cGGCGGCGACGGACGGCGACACGACGAc -3'
miRNA:   3'- -CCGCCGCUGCCUGCCGCUGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 34938 0.79 0.062535
Target:  5'- aGGCGGCGGCGGGugcgaccgUGGCGAUcgucguCGGCGAg -3'
miRNA:   3'- -CCGCCGCUGCCU--------GCCGCUGu-----GCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 34702 0.67 0.405736
Target:  5'- gGGCGGCcgucgucGCGcuuGCGGUG-CGCGGCGAu -3'
miRNA:   3'- -CCGCCGc------UGCc--UGCCGCuGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 34298 0.66 0.481202
Target:  5'- uGCGGCugacuGCGGGCGGCaACGgGuaGCGAg -3'
miRNA:   3'- cCGCCGc----UGCCUGCCGcUGUgC--UGCU- -5'
28009 5' -59.7 NC_005887.1 + 34241 0.71 0.24048
Target:  5'- aGCGGCGcCu--CGGCGAgCGCGGCGAg -3'
miRNA:   3'- cCGCCGCuGccuGCCGCU-GUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 33710 0.67 0.42391
Target:  5'- cGUGGCG-CGG-CGGuCGAucugcucgauCGCGGCGAg -3'
miRNA:   3'- cCGCCGCuGCCuGCC-GCU----------GUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 32426 0.69 0.293088
Target:  5'- cGGCGGCGAUGuggccGGCGGCGAuCAgGuuGCGc -3'
miRNA:   3'- -CCGCCGCUGC-----CUGCCGCU-GUgC--UGCu -5'
28009 5' -59.7 NC_005887.1 + 32142 0.68 0.379414
Target:  5'- -cCGGCG-CGGGCauCGACGCGACGc -3'
miRNA:   3'- ccGCCGCuGCCUGccGCUGUGCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.