miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28009 5' -59.7 NC_005887.1 + 8385 0.7 0.286048
Target:  5'- cGGUGcUGACGGACGcCGcACGCGACGu -3'
miRNA:   3'- -CCGCcGCUGCCUGCcGC-UGUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 9208 0.66 0.442562
Target:  5'- cGCGGC-ACGGuCGGCugcuucuaccGACgcaACGGCGAg -3'
miRNA:   3'- cCGCCGcUGCCuGCCG----------CUG---UGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 9276 0.71 0.24048
Target:  5'- -aCGGCGGuCGGcACGGCGACGCcGCa- -3'
miRNA:   3'- ccGCCGCU-GCC-UGCCGCUGUGcUGcu -5'
28009 5' -59.7 NC_005887.1 + 9350 0.66 0.471384
Target:  5'- cGGCaccgGGCagGACGaauCGGCGACA-GACGAa -3'
miRNA:   3'- -CCG----CCG--CUGCcu-GCCGCUGUgCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 9463 0.69 0.315014
Target:  5'- aGGUGGUcACGGguACGGUGGCgACGaACGAc -3'
miRNA:   3'- -CCGCCGcUGCC--UGCCGCUG-UGC-UGCU- -5'
28009 5' -59.7 NC_005887.1 + 9788 0.69 0.322594
Target:  5'- cGGCaugacgGGCGAUGaGugGGUGAUugGGCc- -3'
miRNA:   3'- -CCG------CCGCUGC-CugCCGCUGugCUGcu -5'
28009 5' -59.7 NC_005887.1 + 10098 0.68 0.378556
Target:  5'- gGGCGGCccgcgccGACGGccagcugauCGGCuGCACGuACGAc -3'
miRNA:   3'- -CCGCCG-------CUGCCu--------GCCGcUGUGC-UGCU- -5'
28009 5' -59.7 NC_005887.1 + 10562 0.78 0.071728
Target:  5'- cGGCGGCaGACcacuggcucgcagGGugGGCGACucCGACGAc -3'
miRNA:   3'- -CCGCCG-CUG-------------CCugCCGCUGu-GCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 10740 0.66 0.481202
Target:  5'- -aUGGCGACauGGAauCGGacuGGCGCGGCGGg -3'
miRNA:   3'- ccGCCGCUG--CCU--GCCg--CUGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 11007 0.66 0.461669
Target:  5'- cGUGGgccaucgaCGACGGccCGGuCGGCACGugGGa -3'
miRNA:   3'- cCGCC--------GCUGCCu-GCC-GCUGUGCugCU- -5'
28009 5' -59.7 NC_005887.1 + 11141 0.66 0.480216
Target:  5'- uGGCGGCGcauugaaAUGGACGuCGACACuGAg-- -3'
miRNA:   3'- -CCGCCGC-------UGCCUGCcGCUGUG-CUgcu -5'
28009 5' -59.7 NC_005887.1 + 11932 0.67 0.396835
Target:  5'- cGuCGGCcuGAUGGugGGCGAacuCGGCGu -3'
miRNA:   3'- cC-GCCG--CUGCCugCCGCUgu-GCUGCu -5'
28009 5' -59.7 NC_005887.1 + 12141 0.68 0.370898
Target:  5'- aGGCcGCGACGcGGCguGGCuGGC-CGGCGAg -3'
miRNA:   3'- -CCGcCGCUGC-CUG--CCG-CUGuGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 12629 0.73 0.163129
Target:  5'- cGCGGCG-CGuGAUccuGCGACGCGACGGc -3'
miRNA:   3'- cCGCCGCuGC-CUGc--CGCUGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 13398 0.76 0.108898
Target:  5'- cGGC-GCGGCGGAcguCGGCGGCaagccgcugcugACGACGAg -3'
miRNA:   3'- -CCGcCGCUGCCU---GCCGCUG------------UGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 13780 0.67 0.396835
Target:  5'- cGCGuccGCGcaGCGGGCGGCGACGCcuACa- -3'
miRNA:   3'- cCGC---CGC--UGCCUGCCGCUGUGc-UGcu -5'
28009 5' -59.7 NC_005887.1 + 13953 0.67 0.405736
Target:  5'- cGGCuGCGACGuGC-GCGugACGACa- -3'
miRNA:   3'- -CCGcCGCUGCcUGcCGCugUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 14207 0.69 0.293088
Target:  5'- cGCGGCcucgGACaGGGCGGCGccgcgcuguucgGCGCGGCa- -3'
miRNA:   3'- cCGCCG----CUG-CCUGCCGC------------UGUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 14527 0.71 0.228622
Target:  5'- uGCaGGCG-CGGccguCGGCGGCGCGuCGAu -3'
miRNA:   3'- cCG-CCGCuGCCu---GCCGCUGUGCuGCU- -5'
28009 5' -59.7 NC_005887.1 + 14659 0.68 0.354261
Target:  5'- cGCGGCGA-GGuACGGCacguGAUGCaGACGAu -3'
miRNA:   3'- cCGCCGCUgCC-UGCCG----CUGUG-CUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.