miRNA display CGI


Results 41 - 60 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28009 5' -59.7 NC_005887.1 + 27517 0.68 0.353443
Target:  5'- uGGCGugaauacGCGGCGGGCGGUcAUggGCGGCGc -3'
miRNA:   3'- -CCGC-------CGCUGCCUGCCGcUG--UGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 5014 0.68 0.346143
Target:  5'- uGCGGCGACcGAugccagugcCGGCGcuGCuGCGACGAc -3'
miRNA:   3'- cCGCCGCUGcCU---------GCCGC--UG-UGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 26011 0.68 0.346142
Target:  5'- gGGCGGCGuCGGG-GGCGAgGCuacCGGg -3'
miRNA:   3'- -CCGCCGCuGCCUgCCGCUgUGcu-GCU- -5'
28009 5' -59.7 NC_005887.1 + 15652 0.69 0.330308
Target:  5'- cGCGGCcGCGcGACGGCuGuauCGCGACa- -3'
miRNA:   3'- cCGCCGcUGC-CUGCCG-Cu--GUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 6167 0.69 0.329531
Target:  5'- cGGCacGGUGAucccgguCGGcACGGUGACGCGccGCGAc -3'
miRNA:   3'- -CCG--CCGCU-------GCC-UGCCGCUGUGC--UGCU- -5'
28009 5' -59.7 NC_005887.1 + 5623 0.69 0.322594
Target:  5'- uGCgGGCGACGcGGugaaGGCGAUACG-CGAg -3'
miRNA:   3'- cCG-CCGCUGC-CUg---CCGCUGUGCuGCU- -5'
28009 5' -59.7 NC_005887.1 + 5814 0.69 0.322594
Target:  5'- cGGCGGCGAuCGaGuCGGCGcggguCGCGaaggGCGAa -3'
miRNA:   3'- -CCGCCGCU-GC-CuGCCGCu----GUGC----UGCU- -5'
28009 5' -59.7 NC_005887.1 + 9788 0.69 0.322594
Target:  5'- cGGCaugacgGGCGAUGaGugGGUGAUugGGCc- -3'
miRNA:   3'- -CCG------CCGCUGC-CugCCGCUGugCUGcu -5'
28009 5' -59.7 NC_005887.1 + 19809 0.69 0.315014
Target:  5'- uGGC-GCGAcCGGAaaCGGgGGCGuCGACGAc -3'
miRNA:   3'- -CCGcCGCU-GCCU--GCCgCUGU-GCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 9463 0.69 0.315014
Target:  5'- aGGUGGUcACGGguACGGUGGCgACGaACGAc -3'
miRNA:   3'- -CCGCCGcUGCC--UGCCGCUG-UGC-UGCU- -5'
28009 5' -59.7 NC_005887.1 + 17275 0.69 0.30757
Target:  5'- gGGCGaGaCGuCGGGCGGCGcCGCGcGCGc -3'
miRNA:   3'- -CCGC-C-GCuGCCUGCCGCuGUGC-UGCu -5'
28009 5' -59.7 NC_005887.1 + 36511 0.69 0.30757
Target:  5'- uGCGGuCGAccgcagcauCGGGCGGCGGCAgGuauuucGCGAa -3'
miRNA:   3'- cCGCC-GCU---------GCCUGCCGCUGUgC------UGCU- -5'
28009 5' -59.7 NC_005887.1 + 21037 0.69 0.299538
Target:  5'- cGGuCGGCG-CGGugGGCGugcccgugaauguGgGCGACGc -3'
miRNA:   3'- -CC-GCCGCuGCCugCCGC-------------UgUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 1986 0.69 0.293088
Target:  5'- cGCGcGCGACGGcggcACGGCcGCGCucGACGGc -3'
miRNA:   3'- cCGC-CGCUGCC----UGCCGcUGUG--CUGCU- -5'
28009 5' -59.7 NC_005887.1 + 32426 0.69 0.293088
Target:  5'- cGGCGGCGAUGuggccGGCGGCGAuCAgGuuGCGc -3'
miRNA:   3'- -CCGCCGCUGC-----CUGCCGCU-GUgC--UGCu -5'
28009 5' -59.7 NC_005887.1 + 14207 0.69 0.293088
Target:  5'- cGCGGCcucgGACaGGGCGGCGccgcgcuguucgGCGCGGCa- -3'
miRNA:   3'- cCGCCG----CUG-CCUGCCGC------------UGUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 35121 0.7 0.286048
Target:  5'- gGGCGGgGcGCGGAucggaaucCGGCGcCACgGACGGg -3'
miRNA:   3'- -CCGCCgC-UGCCU--------GCCGCuGUG-CUGCU- -5'
28009 5' -59.7 NC_005887.1 + 8385 0.7 0.286048
Target:  5'- cGGUGcUGACGGACGcCGcACGCGACGu -3'
miRNA:   3'- -CCGCcGCUGCCUGCcGC-UGUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 19722 0.7 0.279143
Target:  5'- aGgGGUGucGCGGAucuggugcauUGGCGGCACGACGc -3'
miRNA:   3'- cCgCCGC--UGCCU----------GCCGCUGUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 14820 0.7 0.272371
Target:  5'- uGGCGGCcgcGACGcuGAUGGCGgGCACGuucGCGGg -3'
miRNA:   3'- -CCGCCG---CUGC--CUGCCGC-UGUGC---UGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.