Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28010 | 5' | -53.3 | NC_005887.1 | + | 8404 | 0.69 | 0.564774 |
Target: 5'- aCGCgacgUGcUCGCCGAgCgcCGUCGGCa -3' miRNA: 3'- aGCGa---AC-AGCGGCUaGaaGCAGUCGc -5' |
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28010 | 5' | -53.3 | NC_005887.1 | + | 13665 | 0.66 | 0.743389 |
Target: 5'- uUCGCgggcgUGaUCGCgGGUUgUCGUCuGGCGa -3' miRNA: 3'- -AGCGa----AC-AGCGgCUAGaAGCAG-UCGC- -5' |
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28010 | 5' | -53.3 | NC_005887.1 | + | 14076 | 0.66 | 0.743389 |
Target: 5'- gCGCUcGgcgUGCCGAUgaugcUCGUCAGUGg -3' miRNA: 3'- aGCGAaCa--GCGGCUAga---AGCAGUCGC- -5' |
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28010 | 5' | -53.3 | NC_005887.1 | + | 15582 | 0.66 | 0.785212 |
Target: 5'- uUCGCUgaUCGCCGAagCUgagaCG-CAGCGc -3' miRNA: 3'- -AGCGAacAGCGGCUa-GAa---GCaGUCGC- -5' |
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28010 | 5' | -53.3 | NC_005887.1 | + | 17386 | 0.71 | 0.447489 |
Target: 5'- cUCGCUguUGaacgCGCUGGUCgaucaCGUCGGCGg -3' miRNA: 3'- -AGCGA--ACa---GCGGCUAGaa---GCAGUCGC- -5' |
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28010 | 5' | -53.3 | NC_005887.1 | + | 19621 | 0.67 | 0.710733 |
Target: 5'- uUCGCgagcagUGUccCGCCGAUC-UCGcucaCGGCGa -3' miRNA: 3'- -AGCGa-----ACA--GCGGCUAGaAGCa---GUCGC- -5' |
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28010 | 5' | -53.3 | NC_005887.1 | + | 22845 | 0.67 | 0.688534 |
Target: 5'- gUCGCcUG-CGCCGAUgcUCGcCGGCa -3' miRNA: 3'- -AGCGaACaGCGGCUAgaAGCaGUCGc -5' |
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28010 | 5' | -53.3 | NC_005887.1 | + | 24019 | 0.66 | 0.774978 |
Target: 5'- gUCGCaUGUCGCCGAUg--CGccccCAGUGc -3' miRNA: 3'- -AGCGaACAGCGGCUAgaaGCa---GUCGC- -5' |
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28010 | 5' | -53.3 | NC_005887.1 | + | 24226 | 0.66 | 0.743389 |
Target: 5'- gCGCU--UCGCCGGUUg-CGUaCAGCGc -3' miRNA: 3'- aGCGAacAGCGGCUAGaaGCA-GUCGC- -5' |
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28010 | 5' | -53.3 | NC_005887.1 | + | 27970 | 0.68 | 0.628849 |
Target: 5'- aUCGCUcuUGcCGCCGccggcucgggccgaAUCgcgUCGUCGGCc -3' miRNA: 3'- -AGCGA--ACaGCGGC--------------UAGa--AGCAGUCGc -5' |
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28010 | 5' | -53.3 | NC_005887.1 | + | 28465 | 0.67 | 0.699668 |
Target: 5'- -gGCUUGUUGCCGggCcgCuUCAGCu -3' miRNA: 3'- agCGAACAGCGGCuaGaaGcAGUCGc -5' |
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28010 | 5' | -53.3 | NC_005887.1 | + | 29425 | 0.72 | 0.417853 |
Target: 5'- -aGCUcGUCgGCCGAguagUCGUCGGCGu -3' miRNA: 3'- agCGAaCAG-CGGCUaga-AGCAGUCGC- -5' |
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28010 | 5' | -53.3 | NC_005887.1 | + | 32657 | 0.66 | 0.732606 |
Target: 5'- aUCGCUgaGUCaUCGGUCUgcUgGUCGGCGu -3' miRNA: 3'- -AGCGAa-CAGcGGCUAGA--AgCAGUCGC- -5' |
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28010 | 5' | -53.3 | NC_005887.1 | + | 32991 | 0.69 | 0.598372 |
Target: 5'- uUCGUcUGUCGCCGAU--UCGUCcuGCc -3' miRNA: 3'- -AGCGaACAGCGGCUAgaAGCAGu-CGc -5' |
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28010 | 5' | -53.3 | NC_005887.1 | + | 33516 | 0.66 | 0.785212 |
Target: 5'- gCGCgaucUUGUCGgCGAUCacCGUgAGCGc -3' miRNA: 3'- aGCG----AACAGCgGCUAGaaGCAgUCGC- -5' |
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28010 | 5' | -53.3 | NC_005887.1 | + | 33886 | 0.67 | 0.710733 |
Target: 5'- gCGCUccGUCGCCGuAUUggUCGUCGuGCu -3' miRNA: 3'- aGCGAa-CAGCGGC-UAGa-AGCAGU-CGc -5' |
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28010 | 5' | -53.3 | NC_005887.1 | + | 34064 | 0.66 | 0.732606 |
Target: 5'- gCGUgUGUCaGCCGuuuuUCUUCGUCAcCGu -3' miRNA: 3'- aGCGaACAG-CGGCu---AGAAGCAGUcGC- -5' |
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28010 | 5' | -53.3 | NC_005887.1 | + | 34383 | 1.09 | 0.00127 |
Target: 5'- uUCGCUUGUCGCCGAUCUUCGUCAGCGc -3' miRNA: 3'- -AGCGAACAGCGGCUAGAAGCAGUCGC- -5' |
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28010 | 5' | -53.3 | NC_005887.1 | + | 34937 | 0.7 | 0.499334 |
Target: 5'- cUUGCc-GUCGCCGG-CUUCGaacUCGGCGg -3' miRNA: 3'- -AGCGaaCAGCGGCUaGAAGC---AGUCGC- -5' |
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28010 | 5' | -53.3 | NC_005887.1 | + | 34983 | 0.69 | 0.609644 |
Target: 5'- aCGCggcgUUGUCGUCGGUCUg---CAGCGc -3' miRNA: 3'- aGCG----AACAGCGGCUAGAagcaGUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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