miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28011 3' -52.1 NC_005887.1 + 37387 0.67 0.768865
Target:  5'- cUUCUCCuUCAgCUGGC-GCUGcgCGg -3'
miRNA:   3'- cAAGAGGuAGUgGACCGuUGGCaaGC- -5'
28011 3' -52.1 NC_005887.1 + 36442 0.74 0.343027
Target:  5'- --aCUUgcgCAUCGCCUGGCGACCGagcUCGa -3'
miRNA:   3'- caaGAG---GUAGUGGACCGUUGGCa--AGC- -5'
28011 3' -52.1 NC_005887.1 + 35989 0.69 0.6347
Target:  5'- aGUUgUCCGUUACCUGuGCAGucgagcucUUGUUCGg -3'
miRNA:   3'- -CAAgAGGUAGUGGAC-CGUU--------GGCAAGC- -5'
28011 3' -52.1 NC_005887.1 + 33888 0.66 0.819538
Target:  5'- --gCUCCGUCGCCguauUGGUcgUCGUgcUCGg -3'
miRNA:   3'- caaGAGGUAGUGG----ACCGuuGGCA--AGC- -5'
28011 3' -52.1 NC_005887.1 + 33695 1.1 0.001223
Target:  5'- aGUUCUCCAUCACCUGGCAACCGUUCGg -3'
miRNA:   3'- -CAAGAGGUAGUGGACCGUUGGCAAGC- -5'
28011 3' -52.1 NC_005887.1 + 30064 0.68 0.702021
Target:  5'- --gCUCCAUCACCuugccgagcUGGCGcauguacuugucgACCGcUUCGa -3'
miRNA:   3'- caaGAGGUAGUGG---------ACCGU-------------UGGC-AAGC- -5'
28011 3' -52.1 NC_005887.1 + 27623 0.66 0.809785
Target:  5'- uUUCUCgauCGUCGCCUGcGCGAUCGccgCGc -3'
miRNA:   3'- cAAGAG---GUAGUGGAC-CGUUGGCaa-GC- -5'
28011 3' -52.1 NC_005887.1 + 21494 0.69 0.6347
Target:  5'- -aUCUCgCAUCGCCgccGGCAAUCGgcgCa -3'
miRNA:   3'- caAGAG-GUAGUGGa--CCGUUGGCaa-Gc -5'
28011 3' -52.1 NC_005887.1 + 4933 0.67 0.758219
Target:  5'- --aCUCCG-CACCUGGCGugCaGgcagUCGc -3'
miRNA:   3'- caaGAGGUaGUGGACCGUugG-Ca---AGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.