Results 81 - 86 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28011 | 5' | -56.6 | NC_005887.1 | + | 14670 | 0.66 | 0.574975 |
Target: 5'- -aCGGCACGUGaugcagacgaucaaGCCGcGCGcGCGGCa -3' miRNA: 3'- uaGCUGUGCACg-------------UGGCuCGU-UGCCGc -5' |
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28011 | 5' | -56.6 | NC_005887.1 | + | 31300 | 0.66 | 0.581593 |
Target: 5'- cUCGAC-CG-GCAUCGGcGCAcCGGUGg -3' miRNA: 3'- uAGCUGuGCaCGUGGCU-CGUuGCCGC- -5' |
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28011 | 5' | -56.6 | NC_005887.1 | + | 33962 | 0.66 | 0.581593 |
Target: 5'- -aCGuCGCGUGCGgcguCCGucAGCAcCGGCGc -3' miRNA: 3'- uaGCuGUGCACGU----GGC--UCGUuGCCGC- -5' |
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28011 | 5' | -56.6 | NC_005887.1 | + | 13773 | 0.66 | 0.581593 |
Target: 5'- cGUCGAcCGCGUccgcGCAgCGGGCGGCGaCGc -3' miRNA: 3'- -UAGCU-GUGCA----CGUgGCUCGUUGCcGC- -5' |
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28011 | 5' | -56.6 | NC_005887.1 | + | 8404 | 0.66 | 0.581593 |
Target: 5'- -aCGcgACGUGCucGCCGAGCGccguCGGCa -3' miRNA: 3'- uaGCugUGCACG--UGGCUCGUu---GCCGc -5' |
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28011 | 5' | -56.6 | NC_005887.1 | + | 17297 | 0.66 | 0.581593 |
Target: 5'- uUCGGCcaGCG-GCACUGcGGCAugGGUu -3' miRNA: 3'- uAGCUG--UGCaCGUGGC-UCGUugCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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