miRNA display CGI


Results 61 - 80 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28011 5' -56.6 NC_005887.1 + 14699 0.7 0.319226
Target:  5'- cUCGuCGCGgcggGCggGCCGGGCG-CGGCGa -3'
miRNA:   3'- uAGCuGUGCa---CG--UGGCUCGUuGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 4495 0.68 0.431619
Target:  5'- -aCGGCGCGcGCAUCGcGCGucugcucgccgacuACGGCGg -3'
miRNA:   3'- uaGCUGUGCaCGUGGCuCGU--------------UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 40924 0.68 0.434544
Target:  5'- -cCG-CGCGcGCACCGAGUu-CGGCa -3'
miRNA:   3'- uaGCuGUGCaCGUGGCUCGuuGCCGc -5'
28011 5' -56.6 NC_005887.1 + 31300 0.66 0.581593
Target:  5'- cUCGAC-CG-GCAUCGGcGCAcCGGUGg -3'
miRNA:   3'- uAGCUGuGCaCGUGGCU-CGUuGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 9392 0.66 0.574975
Target:  5'- gAUCGGCGCGgaaugggaauaccaGCACuCGGGCuauggAACGGUGc -3'
miRNA:   3'- -UAGCUGUGCa-------------CGUG-GCUCG-----UUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 28281 0.66 0.570572
Target:  5'- cAUCGGCACGccgaGCGCgCGcAGCGucgUGGCGa -3'
miRNA:   3'- -UAGCUGUGCa---CGUG-GC-UCGUu--GCCGC- -5'
28011 5' -56.6 NC_005887.1 + 35667 0.66 0.570572
Target:  5'- uGUCGACAUacaGCAgCGcGCGAuCGGCGg -3'
miRNA:   3'- -UAGCUGUGca-CGUgGCuCGUU-GCCGC- -5'
28011 5' -56.6 NC_005887.1 + 11890 0.66 0.570572
Target:  5'- uUCGGCA---GCGCCG-GCAacuucACGGCGg -3'
miRNA:   3'- uAGCUGUgcaCGUGGCuCGU-----UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 14140 0.66 0.537848
Target:  5'- gAUCGA--UGUGC-CCGAGCcGACGGUc -3'
miRNA:   3'- -UAGCUguGCACGuGGCUCG-UUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 8954 0.66 0.559602
Target:  5'- -cCGACACGaUGUACCu-GUuucACGGCGg -3'
miRNA:   3'- uaGCUGUGC-ACGUGGcuCGu--UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 22236 0.66 0.537848
Target:  5'- gAUCGuCGCGUGguUCacgaucAGCGACGGUGg -3'
miRNA:   3'- -UAGCuGUGCACguGGc-----UCGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 28397 0.66 0.536768
Target:  5'- uGUCGaucacgcGCACGUcGCAgCCGAGCGcgcGCaGGCGc -3'
miRNA:   3'- -UAGC-------UGUGCA-CGU-GGCUCGU---UG-CCGC- -5'
28011 5' -56.6 NC_005887.1 + 1793 0.67 0.515329
Target:  5'- cGUCGGCcgcuacccgaaggACGUGcCGCCGAccuGguACGGCa -3'
miRNA:   3'- -UAGCUG-------------UGCAC-GUGGCU---CguUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 29855 0.67 0.505794
Target:  5'- uGUCGcaggcgaugaACACGUccuGCggcagGCCGAGCGuACGGCGu -3'
miRNA:   3'- -UAGC----------UGUGCA---CG-----UGGCUCGU-UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 2467 0.67 0.484886
Target:  5'- cGUCGACGag-GCGCUGAcGCGgaucaucgACGGCGa -3'
miRNA:   3'- -UAGCUGUgcaCGUGGCU-CGU--------UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 15384 0.67 0.474587
Target:  5'- gGUCGACGCcgcgcugaucGCGCgCGGGCAGCGGa- -3'
miRNA:   3'- -UAGCUGUGca--------CGUG-GCUCGUUGCCgc -5'
28011 5' -56.6 NC_005887.1 + 40763 0.68 0.464399
Target:  5'- cGUUGGCGCGccGCgcgccGCCGAGC--CGGCGg -3'
miRNA:   3'- -UAGCUGUGCa-CG-----UGGCUCGuuGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 27337 0.68 0.464399
Target:  5'- cGUCGAC---UGCGCCacgcGCAGCGGCGc -3'
miRNA:   3'- -UAGCUGugcACGUGGcu--CGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 2238 0.68 0.454327
Target:  5'- gGUCGGaaguCGUcGCGaCGAGCAugGGCGc -3'
miRNA:   3'- -UAGCUgu--GCA-CGUgGCUCGUugCCGC- -5'
28011 5' -56.6 NC_005887.1 + 40231 0.68 0.444373
Target:  5'- --aGAacaGCGU--GCCGAGCGACGGCu -3'
miRNA:   3'- uagCUg--UGCAcgUGGCUCGUUGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.