miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 5' -58 NC_005887.1 + 42088 0.71 0.268539
Target:  5'- uGUCGCGugG-GGCGCga--UGCCGCg -3'
miRNA:   3'- cCGGCGCugCuUCGCGaaugGCGGCG- -5'
28012 5' -58 NC_005887.1 + 42000 0.66 0.543382
Target:  5'- cGGCCuGCGGCccacgucGAGUGUc-GCCGCgGCg -3'
miRNA:   3'- -CCGG-CGCUGc------UUCGCGaaUGGCGgCG- -5'
28012 5' -58 NC_005887.1 + 41942 0.66 0.511883
Target:  5'- gGGCggCGCGGCGcgucuucgcGGCGCUUGCCcGUcuuuuCGCa -3'
miRNA:   3'- -CCG--GCGCUGCu--------UCGCGAAUGG-CG-----GCG- -5'
28012 5' -58 NC_005887.1 + 41702 0.67 0.461192
Target:  5'- cGGUCauGCG-CGu-GCGCUcGCCGCgCGCu -3'
miRNA:   3'- -CCGG--CGCuGCuuCGCGAaUGGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 41592 0.77 0.110916
Target:  5'- cGGCCaGCGGCGGcccaGGUGCggcgGCCGgCGCg -3'
miRNA:   3'- -CCGG-CGCUGCU----UCGCGaa--UGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 41528 0.66 0.501549
Target:  5'- cGGCCGCGAuCGcgcGAGCaugGCUguugAUCGCgauCGCg -3'
miRNA:   3'- -CCGGCGCU-GC---UUCG---CGAa---UGGCG---GCG- -5'
28012 5' -58 NC_005887.1 + 41443 0.68 0.394087
Target:  5'- gGGUCGCGAcgcggauCGAAGC-CgagGCCGCCu- -3'
miRNA:   3'- -CCGGCGCU-------GCUUCGcGaa-UGGCGGcg -5'
28012 5' -58 NC_005887.1 + 41438 0.7 0.296777
Target:  5'- cGCCuCGugGGcuauGCGCUgcucgGCaCGCCGCg -3'
miRNA:   3'- cCGGcGCugCUu---CGCGAa----UG-GCGGCG- -5'
28012 5' -58 NC_005887.1 + 41331 0.67 0.431127
Target:  5'- cGGUCGUGACGccGguugaguacgaucCGCgcGCCGCCGg -3'
miRNA:   3'- -CCGGCGCUGCuuC-------------GCGaaUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 41284 0.72 0.242509
Target:  5'- -cCUGCGcACGGGcGCGCUgcUGCCGCCGg -3'
miRNA:   3'- ccGGCGC-UGCUU-CGCGA--AUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 41099 0.66 0.511883
Target:  5'- aGCUauGCGACGuuuucgcGUGCUgAgCGCCGCg -3'
miRNA:   3'- cCGG--CGCUGCuu-----CGCGAaUgGCGGCG- -5'
28012 5' -58 NC_005887.1 + 41009 0.68 0.386042
Target:  5'- uGGUaCGUGugGAcaGGCGUcUACuggCGCCGCg -3'
miRNA:   3'- -CCG-GCGCugCU--UCGCGaAUG---GCGGCG- -5'
28012 5' -58 NC_005887.1 + 40909 0.67 0.441665
Target:  5'- aGCCGC--CGAAG-GC-UACCGCgCGCg -3'
miRNA:   3'- cCGGCGcuGCUUCgCGaAUGGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 40860 0.75 0.138456
Target:  5'- cGGCCGCGccGCGcGAGCGCc-GCaCGCCGUc -3'
miRNA:   3'- -CCGGCGC--UGC-UUCGCGaaUG-GCGGCG- -5'
28012 5' -58 NC_005887.1 + 40786 0.66 0.532806
Target:  5'- aGCCgGCGGuCGAGGUucgugGCggcgACgCGCCGCu -3'
miRNA:   3'- cCGG-CGCU-GCUUCG-----CGaa--UG-GCGGCG- -5'
28012 5' -58 NC_005887.1 + 40742 0.7 0.295312
Target:  5'- cGcCCGCGuCGAGGCGaucgccguugGCgCGCCGCg -3'
miRNA:   3'- cC-GGCGCuGCUUCGCgaa-------UG-GCGGCG- -5'
28012 5' -58 NC_005887.1 + 40643 0.66 0.511883
Target:  5'- aGGCacUGACGAGcGCGCgccgaucACCGgCCGCa -3'
miRNA:   3'- -CCGgcGCUGCUU-CGCGaa-----UGGC-GGCG- -5'
28012 5' -58 NC_005887.1 + 40353 0.68 0.394988
Target:  5'- uGGCCGU--CG-AGCGCggccgUGCCGCuCGUc -3'
miRNA:   3'- -CCGGCGcuGCuUCGCGa----AUGGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 40147 0.69 0.335244
Target:  5'- cGCUGCG-CGccGCGCU---CGCCGCg -3'
miRNA:   3'- cCGGCGCuGCuuCGCGAaugGCGGCG- -5'
28012 5' -58 NC_005887.1 + 40117 0.69 0.356642
Target:  5'- cGUCGCGACGAcuuccgaccggauGCGCcaGCCGCC-Ca -3'
miRNA:   3'- cCGGCGCUGCUu------------CGCGaaUGGCGGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.