miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28013 5' -62.1 NC_005887.1 + 21040 0.66 0.329308
Target:  5'- ---uCGGCGCgGugggcGUGCCCGUGaaugugGGCg -3'
miRNA:   3'- cauuGCCGCGgC-----CACGGGCGCga----CCG- -5'
28013 5' -62.1 NC_005887.1 + 41361 0.67 0.277906
Target:  5'- --cACGGCgGCCGGcaauuUGCgCGUGUcGGCg -3'
miRNA:   3'- cauUGCCG-CGGCC-----ACGgGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 36057 0.67 0.271108
Target:  5'- gGUGugGGCaGaCCGGUGCgaaccgaCGUGCggUGGCc -3'
miRNA:   3'- -CAUugCCG-C-GGCCACGg------GCGCG--ACCG- -5'
28013 5' -62.1 NC_005887.1 + 33252 1.11 0.000106
Target:  5'- aGUAACGGCGCCGGUGCCCGCGCUGGCa -3'
miRNA:   3'- -CAUUGCCGCGGCCACGGGCGCGACCG- -5'
28013 5' -62.1 NC_005887.1 + 37721 0.66 0.306457
Target:  5'- uUGAUcGCGCCGGcgGCCaccgGCGCcgcGGCg -3'
miRNA:   3'- cAUUGcCGCGGCCa-CGGg---CGCGa--CCG- -5'
28013 5' -62.1 NC_005887.1 + 28733 0.66 0.306457
Target:  5'- --uGCGGcCGCCGc-GCgCCGCGCUGccaGCa -3'
miRNA:   3'- cauUGCC-GCGGCcaCG-GGCGCGAC---CG- -5'
28013 5' -62.1 NC_005887.1 + 25832 0.66 0.306457
Target:  5'- ---uCGGCGCCGGcgGCgaCGCGaucGGCc -3'
miRNA:   3'- cauuGCCGCGGCCa-CGg-GCGCga-CCG- -5'
28013 5' -62.1 NC_005887.1 + 17804 0.66 0.306457
Target:  5'- -cAugGGCGCCcggccgaaGGUGCggCCGCGCgugauGCu -3'
miRNA:   3'- caUugCCGCGG--------CCACG--GGCGCGac---CG- -5'
28013 5' -62.1 NC_005887.1 + 6328 0.66 0.299114
Target:  5'- ---cCGGCGCCgaGGUGa-CGCuGCUGGUu -3'
miRNA:   3'- cauuGCCGCGG--CCACggGCG-CGACCG- -5'
28013 5' -62.1 NC_005887.1 + 6477 0.67 0.277906
Target:  5'- gGgcGCGGCGUcgCGGUGUCUGCcgagcgcaauccGCaGGCg -3'
miRNA:   3'- -CauUGCCGCG--GCCACGGGCG------------CGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 30225 0.66 0.284839
Target:  5'- -cGACGGCgGCC--UGCUCGUcCUGGCg -3'
miRNA:   3'- caUUGCCG-CGGccACGGGCGcGACCG- -5'
28013 5' -62.1 NC_005887.1 + 1421 0.66 0.299114
Target:  5'- ---uCGGCGUugccgaacuCGGUGCgCGCGC-GGUa -3'
miRNA:   3'- cauuGCCGCG---------GCCACGgGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 13933 0.66 0.329308
Target:  5'- --cACGaGCGCC--UGCgCGCGCUcGGCu -3'
miRNA:   3'- cauUGC-CGCGGccACGgGCGCGA-CCG- -5'
28013 5' -62.1 NC_005887.1 + 17342 0.66 0.284839
Target:  5'- -cGGCGGcCGCCGGcGCgagCUGaCGCUcGGCa -3'
miRNA:   3'- caUUGCC-GCGGCCaCG---GGC-GCGA-CCG- -5'
28013 5' -62.1 NC_005887.1 + 18399 0.66 0.329308
Target:  5'- ----aGGuCGUCGGUGCgUGCGCagacGGCc -3'
miRNA:   3'- cauugCC-GCGGCCACGgGCGCGa---CCG- -5'
28013 5' -62.1 NC_005887.1 + 9600 0.66 0.299114
Target:  5'- aUGGCGcGCGCCGGcGCgcacgcgagcgCCGCGCUaccccgccgugGGUg -3'
miRNA:   3'- cAUUGC-CGCGGCCaCG-----------GGCGCGA-----------CCG- -5'
28013 5' -62.1 NC_005887.1 + 745 0.66 0.283442
Target:  5'- -gGGCcGCGCCGGccgccgcaccugGgCCGcCGCUGGCc -3'
miRNA:   3'- caUUGcCGCGGCCa-----------CgGGC-GCGACCG- -5'
28013 5' -62.1 NC_005887.1 + 39979 0.67 0.271108
Target:  5'- -gAACGGCGUgucuucgucguCGGccUGCgaGCGCUGGUc -3'
miRNA:   3'- caUUGCCGCG-----------GCC--ACGggCGCGACCG- -5'
28013 5' -62.1 NC_005887.1 + 9130 0.66 0.321553
Target:  5'- --cACGGCGCgacCGaGUGCCaGUGC-GGCg -3'
miRNA:   3'- cauUGCCGCG---GC-CACGGgCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 28043 0.66 0.306457
Target:  5'- ---uCGGCGUCG--GCCUGCGCUuGCg -3'
miRNA:   3'- cauuGCCGCGGCcaCGGGCGCGAcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.