miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28014 3' -54.5 NC_005887.1 + 32705 1.09 0.000944
Target:  5'- uCGAAGUCGGCAGACACCGACAUCGCGa -3'
miRNA:   3'- -GCUUCAGCCGUCUGUGGCUGUAGCGC- -5'
28014 3' -54.5 NC_005887.1 + 39387 0.8 0.117071
Target:  5'- cCGAGGcCGGCGGcGCaACCGugGUCGCGa -3'
miRNA:   3'- -GCUUCaGCCGUC-UG-UGGCugUAGCGC- -5'
28014 3' -54.5 NC_005887.1 + 30149 0.73 0.302167
Target:  5'- -cAAGUCGGCGccGAUGCCGGCgucgaaGUCGCGg -3'
miRNA:   3'- gcUUCAGCCGU--CUGUGGCUG------UAGCGC- -5'
28014 3' -54.5 NC_005887.1 + 18548 0.73 0.325668
Target:  5'- --cGGUgGGCGGcgGCGCCGGCuUCGCGg -3'
miRNA:   3'- gcuUCAgCCGUC--UGUGGCUGuAGCGC- -5'
28014 3' -54.5 NC_005887.1 + 18396 0.73 0.333797
Target:  5'- cCGAGGUCGucggugcgugcGCAGACggccgcgagGCCGACGucaUCGCGa -3'
miRNA:   3'- -GCUUCAGC-----------CGUCUG---------UGGCUGU---AGCGC- -5'
28014 3' -54.5 NC_005887.1 + 18140 0.72 0.376646
Target:  5'- gCGAAG-C-GCGGGcCGCCGACGUCGUGc -3'
miRNA:   3'- -GCUUCaGcCGUCU-GUGGCUGUAGCGC- -5'
28014 3' -54.5 NC_005887.1 + 35872 0.71 0.394793
Target:  5'- ----cUCGGCAGACACCgcGACGcCGCGc -3'
miRNA:   3'- gcuucAGCCGUCUGUGG--CUGUaGCGC- -5'
28014 3' -54.5 NC_005887.1 + 26205 0.71 0.404076
Target:  5'- aCGggG-CGGCGGugGCCGGCcugcagcuggCGCa -3'
miRNA:   3'- -GCuuCaGCCGUCugUGGCUGua--------GCGc -5'
28014 3' -54.5 NC_005887.1 + 5686 0.71 0.413496
Target:  5'- uGAGGacuaccagcUCGGC-GACACCGAUuUCGCa -3'
miRNA:   3'- gCUUC---------AGCCGuCUGUGGCUGuAGCGc -5'
28014 3' -54.5 NC_005887.1 + 5235 0.71 0.423051
Target:  5'- aCGAGccuGUCGcuGCAGAuCACCGACAugUCGCu -3'
miRNA:   3'- -GCUU---CAGC--CGUCU-GUGGCUGU--AGCGc -5'
28014 3' -54.5 NC_005887.1 + 38842 0.71 0.432736
Target:  5'- aCGuuG-CGGUAGACgaugcccuuGCCGACGUCGUGc -3'
miRNA:   3'- -GCuuCaGCCGUCUG---------UGGCUGUAGCGC- -5'
28014 3' -54.5 NC_005887.1 + 13313 0.71 0.442549
Target:  5'- aGgcGuUCGGCA-ACGCCGgccGCAUCGCGg -3'
miRNA:   3'- gCuuC-AGCCGUcUGUGGC---UGUAGCGC- -5'
28014 3' -54.5 NC_005887.1 + 17844 0.7 0.452487
Target:  5'- ----aUCGGUgGGGCACCGACAaccUCGCGa -3'
miRNA:   3'- gcuucAGCCG-UCUGUGGCUGU---AGCGC- -5'
28014 3' -54.5 NC_005887.1 + 10550 0.7 0.452487
Target:  5'- uGAGGUuggaugcggCGGCAGAcCACUGGC-UCGCa -3'
miRNA:   3'- gCUUCA---------GCCGUCU-GUGGCUGuAGCGc -5'
28014 3' -54.5 NC_005887.1 + 31980 0.7 0.461534
Target:  5'- uCGAcGUCGGCAcgccguuguacguGAUACCGGCGUCcacguagaagGCGg -3'
miRNA:   3'- -GCUuCAGCCGU-------------CUGUGGCUGUAG----------CGC- -5'
28014 3' -54.5 NC_005887.1 + 13508 0.7 0.462545
Target:  5'- aCGAGGUC-GCcGGCACgGGCAUgCGCGc -3'
miRNA:   3'- -GCUUCAGcCGuCUGUGgCUGUA-GCGC- -5'
28014 3' -54.5 NC_005887.1 + 29769 0.7 0.47272
Target:  5'- gCGGccgGGUCGGCGGACACCaug--CGCa -3'
miRNA:   3'- -GCU---UCAGCCGUCUGUGGcuguaGCGc -5'
28014 3' -54.5 NC_005887.1 + 37728 0.7 0.483006
Target:  5'- ---cGcCGGCGGcCACCGGCGcCGCGg -3'
miRNA:   3'- gcuuCaGCCGUCuGUGGCUGUaGCGC- -5'
28014 3' -54.5 NC_005887.1 + 11387 0.7 0.493398
Target:  5'- gCGAAGUUccucacguacGCGGGCGCCGACAUCa-- -3'
miRNA:   3'- -GCUUCAGc---------CGUCUGUGGCUGUAGcgc -5'
28014 3' -54.5 NC_005887.1 + 35077 0.69 0.503893
Target:  5'- -cGGG-CGGCcGGgGCCGAUGUCGCGg -3'
miRNA:   3'- gcUUCaGCCGuCUgUGGCUGUAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.