Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28014 | 3' | -54.5 | NC_005887.1 | + | 6498 | 0.67 | 0.628557 |
Target: 5'- gGAAGUUGcGCAGACGCUGuucuacggcaaugacGgCAUCGCc -3' miRNA: 3'- gCUUCAGC-CGUCUGUGGC---------------U-GUAGCGc -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 25952 | 0.69 | 0.525161 |
Target: 5'- aCGguGgccCGGCAGACGCCGAgCAUCuucgacacuucgGCGa -3' miRNA: 3'- -GCuuCa--GCCGUCUGUGGCU-GUAG------------CGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 13186 | 0.69 | 0.535923 |
Target: 5'- gGAgcGGUCGaGCAGGCcgccgGCCGACguguGUCGCu -3' miRNA: 3'- gCU--UCAGC-CGUCUG-----UGGCUG----UAGCGc -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 33138 | 0.68 | 0.568636 |
Target: 5'- ---cGUCGGUAGAagcaGCCGACcgUGCc -3' miRNA: 3'- gcuuCAGCCGUCUg---UGGCUGuaGCGc -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 11120 | 0.68 | 0.590722 |
Target: 5'- gCGAAGcUGGCcgAGGCGCCGugGcggCGCa -3' miRNA: 3'- -GCUUCaGCCG--UCUGUGGCugUa--GCGc -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 41259 | 0.68 | 0.590722 |
Target: 5'- uCGgcGUCGGCAauGGCGCCGuCGaccugCGCa -3' miRNA: 3'- -GCuuCAGCCGU--CUGUGGCuGUa----GCGc -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 2173 | 0.68 | 0.601823 |
Target: 5'- gGAcuUCGGCcuGACGCCGGC--CGCGg -3' miRNA: 3'- gCUucAGCCGu-CUGUGGCUGuaGCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 22727 | 0.68 | 0.612951 |
Target: 5'- gCGAGaUCGGCgGGACACUG-C-UCGCGa -3' miRNA: 3'- -GCUUcAGCCG-UCUGUGGCuGuAGCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 27601 | 0.67 | 0.624096 |
Target: 5'- uCGAGcGUCGuGUcgaAGGCGCUGAUaccGUCGCGg -3' miRNA: 3'- -GCUU-CAGC-CG---UCUGUGGCUG---UAGCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 12657 | 0.69 | 0.524089 |
Target: 5'- aCGAgugGGUCGGCGauuuGcCGCCGACGaagcuuaUCGCGu -3' miRNA: 3'- -GCU---UCAGCCGU----CuGUGGCUGU-------AGCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 13508 | 0.7 | 0.462545 |
Target: 5'- aCGAGGUC-GCcGGCACgGGCAUgCGCGc -3' miRNA: 3'- -GCUUCAGcCGuCUGUGgCUGUA-GCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 17844 | 0.7 | 0.452487 |
Target: 5'- ----aUCGGUgGGGCACCGACAaccUCGCGa -3' miRNA: 3'- gcuucAGCCG-UCUGUGGCUGU---AGCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 30149 | 0.73 | 0.302167 |
Target: 5'- -cAAGUCGGCGccGAUGCCGGCgucgaaGUCGCGg -3' miRNA: 3'- gcUUCAGCCGU--CUGUGGCUG------UAGCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 18548 | 0.73 | 0.325668 |
Target: 5'- --cGGUgGGCGGcgGCGCCGGCuUCGCGg -3' miRNA: 3'- gcuUCAgCCGUC--UGUGGCUGuAGCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 18140 | 0.72 | 0.376646 |
Target: 5'- gCGAAG-C-GCGGGcCGCCGACGUCGUGc -3' miRNA: 3'- -GCUUCaGcCGUCU-GUGGCUGUAGCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 35872 | 0.71 | 0.394793 |
Target: 5'- ----cUCGGCAGACACCgcGACGcCGCGc -3' miRNA: 3'- gcuucAGCCGUCUGUGG--CUGUaGCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 26205 | 0.71 | 0.404076 |
Target: 5'- aCGggG-CGGCGGugGCCGGCcugcagcuggCGCa -3' miRNA: 3'- -GCuuCaGCCGUCugUGGCUGua--------GCGc -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 5686 | 0.71 | 0.413496 |
Target: 5'- uGAGGacuaccagcUCGGC-GACACCGAUuUCGCa -3' miRNA: 3'- gCUUC---------AGCCGuCUGUGGCUGuAGCGc -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 5235 | 0.71 | 0.423051 |
Target: 5'- aCGAGccuGUCGcuGCAGAuCACCGACAugUCGCu -3' miRNA: 3'- -GCUU---CAGC--CGUCU-GUGGCUGU--AGCGc -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 13313 | 0.71 | 0.442549 |
Target: 5'- aGgcGuUCGGCA-ACGCCGgccGCAUCGCGg -3' miRNA: 3'- gCuuC-AGCCGUcUGUGGC---UGUAGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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