miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28015 3' -57 NC_005887.1 + 30956 0.66 0.570967
Target:  5'- aUGuCGGcGCCCGcguacgugaggaacuUCGCCCACUguUCGg -3'
miRNA:   3'- aGC-GCC-CGGGUu--------------AGUGGGUGAguAGC- -5'
28015 3' -57 NC_005887.1 + 17803 0.66 0.558994
Target:  5'- gUCGCaGGGgCUGAUCGCCgAgUCGcUCGa -3'
miRNA:   3'- -AGCG-CCCgGGUUAGUGGgUgAGU-AGC- -5'
28015 3' -57 NC_005887.1 + 35721 0.66 0.537415
Target:  5'- aCGCGugcaGCUCGGUCgcggucgugGCCCACUCGcUCGg -3'
miRNA:   3'- aGCGCc---CGGGUUAG---------UGGGUGAGU-AGC- -5'
28015 3' -57 NC_005887.1 + 41749 0.67 0.505615
Target:  5'- gCGCGGGCuCUggUCGaagaCCACg-AUCGa -3'
miRNA:   3'- aGCGCCCG-GGuuAGUg---GGUGagUAGC- -5'
28015 3' -57 NC_005887.1 + 2904 0.67 0.505615
Target:  5'- aCGC-GGCCCuuGUCgAUCCACUCGUa- -3'
miRNA:   3'- aGCGcCCGGGu-UAG-UGGGUGAGUAgc -5'
28015 3' -57 NC_005887.1 + 35408 0.67 0.495193
Target:  5'- cCGCGcacGGCCU--UCGCCCACgaGUCGa -3'
miRNA:   3'- aGCGC---CCGGGuuAGUGGGUGagUAGC- -5'
28015 3' -57 NC_005887.1 + 24281 0.67 0.491052
Target:  5'- cUUGcCGGGCgucgccuuguucaCGAUCGCCCAaUCGUCGg -3'
miRNA:   3'- -AGC-GCCCGg------------GUUAGUGGGUgAGUAGC- -5'
28015 3' -57 NC_005887.1 + 40974 0.67 0.48487
Target:  5'- gCGCGGGCCUGAUguacgUGCCCgaGCUCGa-- -3'
miRNA:   3'- aGCGCCCGGGUUA-----GUGGG--UGAGUagc -5'
28015 3' -57 NC_005887.1 + 6649 0.67 0.48487
Target:  5'- cUCGUugugugGGGCCCGAauacCugCCACUCgAUCu -3'
miRNA:   3'- -AGCG------CCCGGGUUa---GugGGUGAG-UAGc -5'
28015 3' -57 NC_005887.1 + 29926 0.67 0.48487
Target:  5'- cCGCGGGCCUcg-CGCCgAuCUCGggaUCGa -3'
miRNA:   3'- aGCGCCCGGGuuaGUGGgU-GAGU---AGC- -5'
28015 3' -57 NC_005887.1 + 32103 0.67 0.48487
Target:  5'- -gGCGGcGgaCGAUCACCCACaggUCAUCa -3'
miRNA:   3'- agCGCC-CggGUUAGUGGGUG---AGUAGc -5'
28015 3' -57 NC_005887.1 + 18391 0.67 0.46454
Target:  5'- cUCGCGaaCCCGAUgGCCUacgccgcggcGCUCGUCGu -3'
miRNA:   3'- -AGCGCccGGGUUAgUGGG----------UGAGUAGC- -5'
28015 3' -57 NC_005887.1 + 9100 0.68 0.454543
Target:  5'- gCGCGGGCaCCGG-CGCCguUACUCugGUCGc -3'
miRNA:   3'- aGCGCCCG-GGUUaGUGG--GUGAG--UAGC- -5'
28015 3' -57 NC_005887.1 + 1445 0.68 0.434906
Target:  5'- gCGCGGuaGCCCu-UCGgCgGCUCGUCGu -3'
miRNA:   3'- aGCGCC--CGGGuuAGUgGgUGAGUAGC- -5'
28015 3' -57 NC_005887.1 + 13665 0.68 0.415769
Target:  5'- uUCGCGGGCgUGAUCGCgggUugUCGUCu -3'
miRNA:   3'- -AGCGCCCGgGUUAGUGg--GugAGUAGc -5'
28015 3' -57 NC_005887.1 + 24165 0.68 0.414825
Target:  5'- cUCGCaGGaacGCCCGAUCgauagccGCCCACagCGUCGu -3'
miRNA:   3'- -AGCG-CC---CGGGUUAG-------UGGGUGa-GUAGC- -5'
28015 3' -57 NC_005887.1 + 25780 0.69 0.361578
Target:  5'- cUUGCGGGCCCGGUCgagAUCgGCUUcgUGc -3'
miRNA:   3'- -AGCGCCCGGGUUAG---UGGgUGAGuaGC- -5'
28015 3' -57 NC_005887.1 + 33946 0.71 0.297304
Target:  5'- gUCGUGcucGGCCCAcgCGCCUugUCGcuUCGu -3'
miRNA:   3'- -AGCGC---CCGGGUuaGUGGGugAGU--AGC- -5'
28015 3' -57 NC_005887.1 + 34870 0.74 0.175847
Target:  5'- aUCGCGGcCUCGAUCGCCUugUCGUUc -3'
miRNA:   3'- -AGCGCCcGGGUUAGUGGGugAGUAGc -5'
28015 3' -57 NC_005887.1 + 32549 1.08 0.000567
Target:  5'- uUCGCGGGCCCAAUCACCCACUCAUCGc -3'
miRNA:   3'- -AGCGCCCGGGUUAGUGGGUGAGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.