miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28016 3' -57.5 NC_005887.1 + 536 0.66 0.527927
Target:  5'- gUCGCCCuuCACGAuCGGcuUGUGGUUg- -3'
miRNA:   3'- -GGCGGGu-GUGCU-GCCuuACGCCGAgg -5'
28016 3' -57.5 NC_005887.1 + 618 0.7 0.331876
Target:  5'- -aGCCCGCGCGcCGGGAU-CGGaucgCCg -3'
miRNA:   3'- ggCGGGUGUGCuGCCUUAcGCCga--GG- -5'
28016 3' -57.5 NC_005887.1 + 1028 0.66 0.581168
Target:  5'- aCCGgCguCACGAcCGuGAUGCGGUguUCCu -3'
miRNA:   3'- -GGCgGguGUGCU-GCcUUACGCCG--AGG- -5'
28016 3' -57.5 NC_005887.1 + 1474 0.73 0.233961
Target:  5'- -aGCCCgACGcCGACGGcGUGCGGCg-- -3'
miRNA:   3'- ggCGGG-UGU-GCUGCCuUACGCCGagg -5'
28016 3' -57.5 NC_005887.1 + 1496 0.69 0.382214
Target:  5'- nCGCUCGCGCGGCGcGGccGUGCGGaaCa -3'
miRNA:   3'- gGCGGGUGUGCUGC-CU--UACGCCgaGg -5'
28016 3' -57.5 NC_005887.1 + 1580 0.75 0.157183
Target:  5'- aCCGCCgGCuCGGCGGcgcGCGGCgcgCCa -3'
miRNA:   3'- -GGCGGgUGuGCUGCCuuaCGCCGa--GG- -5'
28016 3' -57.5 NC_005887.1 + 1687 0.67 0.496853
Target:  5'- aUCGCCCcgaGCACGagcgcaagcugcGCGGcAUGCaGCUCa -3'
miRNA:   3'- -GGCGGG---UGUGC------------UGCCuUACGcCGAGg -5'
28016 3' -57.5 NC_005887.1 + 2227 0.68 0.447017
Target:  5'- gCGCaCCGCACGcuguagGCGuccUGCGGCUCg -3'
miRNA:   3'- gGCG-GGUGUGC------UGCcuuACGCCGAGg -5'
28016 3' -57.5 NC_005887.1 + 4669 0.66 0.570407
Target:  5'- gUCGCUUGCAUG-CGGg--GCGGCUgCu -3'
miRNA:   3'- -GGCGGGUGUGCuGCCuuaCGCCGAgG- -5'
28016 3' -57.5 NC_005887.1 + 4754 0.71 0.301119
Target:  5'- aCGCgCGCACuGACGaGAUccgaauuccgccGCGGCUCCg -3'
miRNA:   3'- gGCGgGUGUG-CUGCcUUA------------CGCCGAGG- -5'
28016 3' -57.5 NC_005887.1 + 6306 0.68 0.418482
Target:  5'- uCUGCCCACAcCGACGuGgcgcaagcuguAcgGCGGCguucugCCg -3'
miRNA:   3'- -GGCGGGUGU-GCUGC-C-----------UuaCGCCGa-----GG- -5'
28016 3' -57.5 NC_005887.1 + 8057 0.71 0.278829
Target:  5'- gCCGCCCGCagucagccgcacgGCGACGGcAUGCGcaagCCg -3'
miRNA:   3'- -GGCGGGUG-------------UGCUGCCuUACGCcga-GG- -5'
28016 3' -57.5 NC_005887.1 + 8307 0.66 0.527927
Target:  5'- aCGCCgAUugGAC-GAGUGC-GCUCg -3'
miRNA:   3'- gGCGGgUGugCUGcCUUACGcCGAGg -5'
28016 3' -57.5 NC_005887.1 + 10100 0.68 0.466629
Target:  5'- gCgGCCCGCGcCGACGGccagcuGAU-CGGCUgCa -3'
miRNA:   3'- -GgCGGGUGU-GCUGCC------UUAcGCCGAgG- -5'
28016 3' -57.5 NC_005887.1 + 10702 0.69 0.391083
Target:  5'- gCCGUCgaACGCGAUGGAccgcGCGGUgCCg -3'
miRNA:   3'- -GGCGGg-UGUGCUGCCUua--CGCCGaGG- -5'
28016 3' -57.5 NC_005887.1 + 12441 0.66 0.581168
Target:  5'- -gGCCCgcgGCAUGugGGAGUG-GGC-Cg -3'
miRNA:   3'- ggCGGG---UGUGCugCCUUACgCCGaGg -5'
28016 3' -57.5 NC_005887.1 + 12967 0.66 0.570407
Target:  5'- aCCGCgCCGCAugggcCGAgGGcAUGCcGCUCg -3'
miRNA:   3'- -GGCG-GGUGU-----GCUgCCuUACGcCGAGg -5'
28016 3' -57.5 NC_005887.1 + 13165 0.66 0.549039
Target:  5'- gCCGCgCGCGCGcagacaGCGGGA-GCGGUcgagcaggCCg -3'
miRNA:   3'- -GGCGgGUGUGC------UGCCUUaCGCCGa-------GG- -5'
28016 3' -57.5 NC_005887.1 + 13395 0.76 0.140944
Target:  5'- -gGCCgGCGCGGCGGAcgucgGCGGCaagCCg -3'
miRNA:   3'- ggCGGgUGUGCUGCCUua---CGCCGa--GG- -5'
28016 3' -57.5 NC_005887.1 + 13781 0.68 0.437384
Target:  5'- gCGUCCGCGCaGCGG---GCGGCgacgCCu -3'
miRNA:   3'- gGCGGGUGUGcUGCCuuaCGCCGa---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.