Results 1 - 20 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 32715 | 0.67 | 0.516444 |
Target: 5'- gCCGCgCGguucaccCACGGCGGggUagcGCGGCg-- -3' miRNA: 3'- -GGCGgGU-------GUGCUGCCuuA---CGCCGagg -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 10702 | 0.69 | 0.391083 |
Target: 5'- gCCGUCgaACGCGAUGGAccgcGCGGUgCCg -3' miRNA: 3'- -GGCGGg-UGUGCUGCCUua--CGCCGaGG- -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 6306 | 0.68 | 0.418482 |
Target: 5'- uCUGCCCACAcCGACGuGgcgcaagcuguAcgGCGGCguucugCCg -3' miRNA: 3'- -GGCGGGUGU-GCUGC-C-----------UuaCGCCGa-----GG- -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 34372 | 0.68 | 0.437384 |
Target: 5'- gCGCCC-CGCGuauCaGAGUGCGGC-Cg -3' miRNA: 3'- gGCGGGuGUGCu--GcCUUACGCCGaGg -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 10100 | 0.68 | 0.466629 |
Target: 5'- gCgGCCCGCGcCGACGGccagcuGAU-CGGCUgCa -3' miRNA: 3'- -GgCGGGUGU-GCUGCC------UUAcGCCGAgG- -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 1687 | 0.67 | 0.496853 |
Target: 5'- aUCGCCCcgaGCACGagcgcaagcugcGCGGcAUGCaGCUCa -3' miRNA: 3'- -GGCGGG---UGUGC------------UGCCuUACGcCGAGg -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 16728 | 0.67 | 0.496853 |
Target: 5'- aCgGCCgGCGCGAucaaguCGGAuuacAUGCGGCa-- -3' miRNA: 3'- -GgCGGgUGUGCU------GCCU----UACGCCGagg -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 27801 | 0.67 | 0.507124 |
Target: 5'- gCGCCgACgcagGCGAgGGAAUagauaGCGGCUUUc -3' miRNA: 3'- gGCGGgUG----UGCUgCCUUA-----CGCCGAGG- -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 28575 | 0.67 | 0.507124 |
Target: 5'- gCCGCCCGCuGCG-CGGAc-GCGGUc-- -3' miRNA: 3'- -GGCGGGUG-UGCuGCCUuaCGCCGagg -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 16952 | 0.69 | 0.382214 |
Target: 5'- gCGCuucaaCCGCGCGGCGGcAAUGuCGGCgagCUc -3' miRNA: 3'- gGCG-----GGUGUGCUGCC-UUAC-GCCGa--GG- -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 1496 | 0.69 | 0.382214 |
Target: 5'- nCGCUCGCGCGGCGcGGccGUGCGGaaCa -3' miRNA: 3'- gGCGGGUGUGCUGC-CU--UACGCCgaGg -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 36660 | 0.69 | 0.364029 |
Target: 5'- gCGCCCAUcuuuuCGAUGGAuugccagaauucgGUGuCGGCUuCCa -3' miRNA: 3'- gGCGGGUGu----GCUGCCU-------------UAC-GCCGA-GG- -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 33383 | 0.75 | 0.165923 |
Target: 5'- gCGCCgGCGCGGCaGGAUGaGGCUCa -3' miRNA: 3'- gGCGGgUGUGCUGcCUUACgCCGAGg -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 24872 | 0.73 | 0.227986 |
Target: 5'- aCCGUCCAgGCGGCGGccGAUGCcgcgcGCUCg -3' miRNA: 3'- -GGCGGGUgUGCUGCC--UUACGc----CGAGg -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 1474 | 0.73 | 0.233961 |
Target: 5'- -aGCCCgACGcCGACGGcGUGCGGCg-- -3' miRNA: 3'- ggCGGG-UGU-GCUGCCuUACGCCGagg -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 37418 | 0.72 | 0.240067 |
Target: 5'- aCUGCCUGCACGccagguGCGGAGUggagcGCGGCgcuugCCu -3' miRNA: 3'- -GGCGGGUGUGC------UGCCUUA-----CGCCGa----GG- -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 14878 | 0.72 | 0.265828 |
Target: 5'- gCGCaCCGCGCGGCaGAAUGCGccaGCUgCu -3' miRNA: 3'- gGCG-GGUGUGCUGcCUUACGC---CGAgG- -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 30983 | 0.7 | 0.316216 |
Target: 5'- uUCGCCCACuguuCGGggUGCGuCUCUc -3' miRNA: 3'- -GGCGGGUGugcuGCCuuACGCcGAGG- -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 14680 | 0.7 | 0.331876 |
Target: 5'- gCUGcCCCGCACGAuCGGGcucGUcGCGGCgggcgggCCg -3' miRNA: 3'- -GGC-GGGUGUGCU-GCCU---UA-CGCCGa------GG- -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 41587 | 0.7 | 0.331876 |
Target: 5'- cCUGUCgGCcaGCGGCGGcccaGGUGCGGCggCCg -3' miRNA: 3'- -GGCGGgUG--UGCUGCC----UUACGCCGa-GG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home