miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28016 3' -57.5 NC_005887.1 + 32715 0.67 0.516444
Target:  5'- gCCGCgCGguucaccCACGGCGGggUagcGCGGCg-- -3'
miRNA:   3'- -GGCGgGU-------GUGCUGCCuuA---CGCCGagg -5'
28016 3' -57.5 NC_005887.1 + 10702 0.69 0.391083
Target:  5'- gCCGUCgaACGCGAUGGAccgcGCGGUgCCg -3'
miRNA:   3'- -GGCGGg-UGUGCUGCCUua--CGCCGaGG- -5'
28016 3' -57.5 NC_005887.1 + 6306 0.68 0.418482
Target:  5'- uCUGCCCACAcCGACGuGgcgcaagcuguAcgGCGGCguucugCCg -3'
miRNA:   3'- -GGCGGGUGU-GCUGC-C-----------UuaCGCCGa-----GG- -5'
28016 3' -57.5 NC_005887.1 + 34372 0.68 0.437384
Target:  5'- gCGCCC-CGCGuauCaGAGUGCGGC-Cg -3'
miRNA:   3'- gGCGGGuGUGCu--GcCUUACGCCGaGg -5'
28016 3' -57.5 NC_005887.1 + 10100 0.68 0.466629
Target:  5'- gCgGCCCGCGcCGACGGccagcuGAU-CGGCUgCa -3'
miRNA:   3'- -GgCGGGUGU-GCUGCC------UUAcGCCGAgG- -5'
28016 3' -57.5 NC_005887.1 + 1687 0.67 0.496853
Target:  5'- aUCGCCCcgaGCACGagcgcaagcugcGCGGcAUGCaGCUCa -3'
miRNA:   3'- -GGCGGG---UGUGC------------UGCCuUACGcCGAGg -5'
28016 3' -57.5 NC_005887.1 + 16728 0.67 0.496853
Target:  5'- aCgGCCgGCGCGAucaaguCGGAuuacAUGCGGCa-- -3'
miRNA:   3'- -GgCGGgUGUGCU------GCCU----UACGCCGagg -5'
28016 3' -57.5 NC_005887.1 + 27801 0.67 0.507124
Target:  5'- gCGCCgACgcagGCGAgGGAAUagauaGCGGCUUUc -3'
miRNA:   3'- gGCGGgUG----UGCUgCCUUA-----CGCCGAGG- -5'
28016 3' -57.5 NC_005887.1 + 28575 0.67 0.507124
Target:  5'- gCCGCCCGCuGCG-CGGAc-GCGGUc-- -3'
miRNA:   3'- -GGCGGGUG-UGCuGCCUuaCGCCGagg -5'
28016 3' -57.5 NC_005887.1 + 16952 0.69 0.382214
Target:  5'- gCGCuucaaCCGCGCGGCGGcAAUGuCGGCgagCUc -3'
miRNA:   3'- gGCG-----GGUGUGCUGCC-UUAC-GCCGa--GG- -5'
28016 3' -57.5 NC_005887.1 + 1496 0.69 0.382214
Target:  5'- nCGCUCGCGCGGCGcGGccGUGCGGaaCa -3'
miRNA:   3'- gGCGGGUGUGCUGC-CU--UACGCCgaGg -5'
28016 3' -57.5 NC_005887.1 + 36660 0.69 0.364029
Target:  5'- gCGCCCAUcuuuuCGAUGGAuugccagaauucgGUGuCGGCUuCCa -3'
miRNA:   3'- gGCGGGUGu----GCUGCCU-------------UAC-GCCGA-GG- -5'
28016 3' -57.5 NC_005887.1 + 33383 0.75 0.165923
Target:  5'- gCGCCgGCGCGGCaGGAUGaGGCUCa -3'
miRNA:   3'- gGCGGgUGUGCUGcCUUACgCCGAGg -5'
28016 3' -57.5 NC_005887.1 + 24872 0.73 0.227986
Target:  5'- aCCGUCCAgGCGGCGGccGAUGCcgcgcGCUCg -3'
miRNA:   3'- -GGCGGGUgUGCUGCC--UUACGc----CGAGg -5'
28016 3' -57.5 NC_005887.1 + 1474 0.73 0.233961
Target:  5'- -aGCCCgACGcCGACGGcGUGCGGCg-- -3'
miRNA:   3'- ggCGGG-UGU-GCUGCCuUACGCCGagg -5'
28016 3' -57.5 NC_005887.1 + 37418 0.72 0.240067
Target:  5'- aCUGCCUGCACGccagguGCGGAGUggagcGCGGCgcuugCCu -3'
miRNA:   3'- -GGCGGGUGUGC------UGCCUUA-----CGCCGa----GG- -5'
28016 3' -57.5 NC_005887.1 + 14878 0.72 0.265828
Target:  5'- gCGCaCCGCGCGGCaGAAUGCGccaGCUgCu -3'
miRNA:   3'- gGCG-GGUGUGCUGcCUUACGC---CGAgG- -5'
28016 3' -57.5 NC_005887.1 + 30983 0.7 0.316216
Target:  5'- uUCGCCCACuguuCGGggUGCGuCUCUc -3'
miRNA:   3'- -GGCGGGUGugcuGCCuuACGCcGAGG- -5'
28016 3' -57.5 NC_005887.1 + 14680 0.7 0.331876
Target:  5'- gCUGcCCCGCACGAuCGGGcucGUcGCGGCgggcgggCCg -3'
miRNA:   3'- -GGC-GGGUGUGCU-GCCU---UA-CGCCGa------GG- -5'
28016 3' -57.5 NC_005887.1 + 41587 0.7 0.331876
Target:  5'- cCUGUCgGCcaGCGGCGGcccaGGUGCGGCggCCg -3'
miRNA:   3'- -GGCGGgUG--UGCUGCC----UUACGCCGa-GG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.