Results 21 - 40 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 27451 | 0.66 | 0.526879 |
Target: 5'- gCCgGCCCACACGuucgagcGCGGAAucucgagcUGuuGCUCg -3' miRNA: 3'- -GG-CGGGUGUGC-------UGCCUU--------ACgcCGAGg -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 22197 | 0.67 | 0.517484 |
Target: 5'- uCUGUCCgGCGCGGCGGucgcauauuAcgGUGGC-CCg -3' miRNA: 3'- -GGCGGG-UGUGCUGCC---------UuaCGCCGaGG- -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 32715 | 0.67 | 0.516444 |
Target: 5'- gCCGCgCGguucaccCACGGCGGggUagcGCGGCg-- -3' miRNA: 3'- -GGCGgGU-------GUGCUGCCuuA---CGCCGagg -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 24458 | 0.67 | 0.507124 |
Target: 5'- gCCGCCgAacuucaucguCGCGGCGGAca--GGUUCCg -3' miRNA: 3'- -GGCGGgU----------GUGCUGCCUuacgCCGAGG- -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 30938 | 0.67 | 0.507124 |
Target: 5'- gCGCUCAgACGAUGccuugGCGGCgCCg -3' miRNA: 3'- gGCGGGUgUGCUGCcuua-CGCCGaGG- -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 28575 | 0.67 | 0.507124 |
Target: 5'- gCCGCCCGCuGCG-CGGAc-GCGGUc-- -3' miRNA: 3'- -GGCGGGUG-UGCuGCCUuaCGCCGagg -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 27801 | 0.67 | 0.507124 |
Target: 5'- gCGCCgACgcagGCGAgGGAAUagauaGCGGCUUUc -3' miRNA: 3'- gGCGGgUG----UGCUgCCUUA-----CGCCGAGG- -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 16728 | 0.67 | 0.496853 |
Target: 5'- aCgGCCgGCGCGAucaaguCGGAuuacAUGCGGCa-- -3' miRNA: 3'- -GgCGGgUGUGCU------GCCU----UACGCCGagg -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 1687 | 0.67 | 0.496853 |
Target: 5'- aUCGCCCcgaGCACGagcgcaagcugcGCGGcAUGCaGCUCa -3' miRNA: 3'- -GGCGGG---UGUGC------------UGCCuUACGcCGAGg -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 16028 | 0.67 | 0.496853 |
Target: 5'- gCGCCgGcCACGGCcugaaccugcaGGAcgGCGGCaacaUCCu -3' miRNA: 3'- gGCGGgU-GUGCUG-----------CCUuaCGCCG----AGG- -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 26740 | 0.67 | 0.486677 |
Target: 5'- gCCGCCUgcuGCGCGACGcccGUGCGcugcgucucaGCUUCg -3' miRNA: 3'- -GGCGGG---UGUGCUGCcu-UACGC----------CGAGG- -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 10100 | 0.68 | 0.466629 |
Target: 5'- gCgGCCCGCGcCGACGGccagcuGAU-CGGCUgCa -3' miRNA: 3'- -GgCGGGUGU-GCUGCC------UUAcGCCGAgG- -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 38622 | 0.68 | 0.466629 |
Target: 5'- gCCGUCCAgcuugcgcggauCGCGGuCGGcgcGCGGCUCg -3' miRNA: 3'- -GGCGGGU------------GUGCU-GCCuuaCGCCGAGg -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 40862 | 0.68 | 0.463659 |
Target: 5'- gCCGCgCCGCGCGAgcgccgcacgccguCGGcGUcgGGCUCCu -3' miRNA: 3'- -GGCG-GGUGUGCU--------------GCCuUAcgCCGAGG- -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 39815 | 0.68 | 0.447017 |
Target: 5'- gCCGCCCGacaGCGccuuGCGcagcGUGCGGCagUCCg -3' miRNA: 3'- -GGCGGGUg--UGC----UGCcu--UACGCCG--AGG- -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 2227 | 0.68 | 0.447017 |
Target: 5'- gCGCaCCGCACGcuguagGCGuccUGCGGCUCg -3' miRNA: 3'- gGCG-GGUGUGC------UGCcuuACGCCGAGg -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 13781 | 0.68 | 0.437384 |
Target: 5'- gCGUCCGCGCaGCGG---GCGGCgacgCCu -3' miRNA: 3'- gGCGGGUGUGcUGCCuuaCGCCGa---GG- -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 34372 | 0.68 | 0.437384 |
Target: 5'- gCGCCC-CGCGuauCaGAGUGCGGC-Cg -3' miRNA: 3'- gGCGGGuGUGCu--GcCUUACGCCGaGg -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 23175 | 0.68 | 0.427872 |
Target: 5'- aCGCCCGCGCcgcucACGGAAUaauCGGUgCCg -3' miRNA: 3'- gGCGGGUGUGc----UGCCUUAc--GCCGaGG- -5' |
|||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 6306 | 0.68 | 0.418482 |
Target: 5'- uCUGCCCACAcCGACGuGgcgcaagcuguAcgGCGGCguucugCCg -3' miRNA: 3'- -GGCGGGUGU-GCUGC-C-----------UuaCGCCGa-----GG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home