miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28016 5' -52.7 NC_005887.1 + 3377 0.7 0.55554
Target:  5'- uGCAGGGa---GUGGUGCgcaCGCUGUUCGc -3'
miRNA:   3'- -CGUCUCgcugUACUACG---GCGACAAGC- -5'
28016 5' -52.7 NC_005887.1 + 4053 0.66 0.799489
Target:  5'- -aAGGGCGAggaaAUGGUgaaGCCGCUGcUCa -3'
miRNA:   3'- cgUCUCGCUg---UACUA---CGGCGACaAGc -5'
28016 5' -52.7 NC_005887.1 + 7125 0.68 0.680659
Target:  5'- gGCGGGGCGGCGcUGcgGC-GCcGUUCa -3'
miRNA:   3'- -CGUCUCGCUGU-ACuaCGgCGaCAAGc -5'
28016 5' -52.7 NC_005887.1 + 10711 0.7 0.511335
Target:  5'- ----cGCGAUGgaccgcgcGGUGCCGCUGUUCGa -3'
miRNA:   3'- cgucuCGCUGUa-------CUACGGCGACAAGC- -5'
28016 5' -52.7 NC_005887.1 + 14218 0.67 0.725456
Target:  5'- aCAGGGCGGC-----GCCGCgcUGUUCGg -3'
miRNA:   3'- cGUCUCGCUGuacuaCGGCG--ACAAGC- -5'
28016 5' -52.7 NC_005887.1 + 14334 0.66 0.788359
Target:  5'- aGCAGgugaacgcGGCGAuCGUGAagcagcgUGCCGggcacCUGUUCGa -3'
miRNA:   3'- -CGUC--------UCGCU-GUACU-------ACGGC-----GACAAGC- -5'
28016 5' -52.7 NC_005887.1 + 17065 0.68 0.680659
Target:  5'- gGCGGA-CGcCGUcAUGCCGCUGcUCGa -3'
miRNA:   3'- -CGUCUcGCuGUAcUACGGCGACaAGC- -5'
28016 5' -52.7 NC_005887.1 + 18570 0.67 0.725456
Target:  5'- cGCGG-GCGACAUGcucGUCGCggcGUUCc -3'
miRNA:   3'- -CGUCuCGCUGUACua-CGGCGa--CAAGc -5'
28016 5' -52.7 NC_005887.1 + 18625 0.7 0.54437
Target:  5'- gGCAGcGCGAUcgGcgGCCcGCUGcugUCGa -3'
miRNA:   3'- -CGUCuCGCUGuaCuaCGG-CGACa--AGC- -5'
28016 5' -52.7 NC_005887.1 + 21273 0.66 0.747302
Target:  5'- cGCGGcGGCGGCGUaugcGCUGCUGgcgUCGc -3'
miRNA:   3'- -CGUC-UCGCUGUAcua-CGGCGACa--AGC- -5'
28016 5' -52.7 NC_005887.1 + 22274 0.66 0.78938
Target:  5'- aGCAG-GCGAUcgGAUuucucGUCGgcCUGUUCGg -3'
miRNA:   3'- -CGUCuCGCUGuaCUA-----CGGC--GACAAGC- -5'
28016 5' -52.7 NC_005887.1 + 22604 0.68 0.646493
Target:  5'- gGUAGAGCGACAgcgucGUGCCGCc----- -3'
miRNA:   3'- -CGUCUCGCUGUac---UACGGCGacaagc -5'
28016 5' -52.7 NC_005887.1 + 22972 0.71 0.458273
Target:  5'- gGCAGcugcGCGAgCAUGGcgcguUGCCGCUGaUCGa -3'
miRNA:   3'- -CGUCu---CGCU-GUACU-----ACGGCGACaAGC- -5'
28016 5' -52.7 NC_005887.1 + 23476 0.67 0.691964
Target:  5'- gGCAGccGGCGACGcccuUGAucugcuUGCCGacgUGUUCGg -3'
miRNA:   3'- -CGUC--UCGCUGU----ACU------ACGGCg--ACAAGC- -5'
28016 5' -52.7 NC_005887.1 + 24877 0.67 0.691964
Target:  5'- cCAG-GCGGCGgccGAUGCCGCgcgcUCGg -3'
miRNA:   3'- cGUCuCGCUGUa--CUACGGCGaca-AGC- -5'
28016 5' -52.7 NC_005887.1 + 25152 0.66 0.799489
Target:  5'- uGCGcGGCGcaacauugccGCGUGcgGCCGC-GUUCGc -3'
miRNA:   3'- -CGUcUCGC----------UGUACuaCGGCGaCAAGC- -5'
28016 5' -52.7 NC_005887.1 + 29613 0.67 0.736436
Target:  5'- uGCAGcGCGGCGcGAucgagcgcauucUGCUGCUGcgCGa -3'
miRNA:   3'- -CGUCuCGCUGUaCU------------ACGGCGACaaGC- -5'
28016 5' -52.7 NC_005887.1 + 32202 0.66 0.799489
Target:  5'- cCAGuGCGGCcagaGGUGCCGCUcgUCa -3'
miRNA:   3'- cGUCuCGCUGua--CUACGGCGAcaAGc -5'
28016 5' -52.7 NC_005887.1 + 32304 1.11 0.000924
Target:  5'- aGCAGAGCGACAUGAUGCCGCUGUUCGu -3'
miRNA:   3'- -CGUCUCGCUGUACUACGGCGACAAGC- -5'
28016 5' -52.7 NC_005887.1 + 32826 0.69 0.600789
Target:  5'- aGCGGGcCGACGUGAUGgCCGCcGUg-- -3'
miRNA:   3'- -CGUCUcGCUGUACUAC-GGCGaCAagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.