Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28017 | 3' | -58.2 | NC_005887.1 | + | 276 | 0.68 | 0.370185 |
Target: 5'- cCCACGCgAcagcgcucgucgaUCCagUCGGCGAGCagGUCCAu -3' miRNA: 3'- uGGUGCGgU-------------AGG--AGCUGCUCG--CAGGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 1867 | 0.66 | 0.484855 |
Target: 5'- gUCGCGCCAcgCCUCGuaauCGAGCucGUCg- -3' miRNA: 3'- uGGUGCGGUa-GGAGCu---GCUCG--CAGgu -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 2957 | 0.76 | 0.117323 |
Target: 5'- cGCCGCGaCCAUCCUCGcCG-GCGacUCCAc -3' miRNA: 3'- -UGGUGC-GGUAGGAGCuGCuCGC--AGGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 4501 | 0.68 | 0.397774 |
Target: 5'- aACCGCGCCcgCUaCGGCGGGCaaUCAc -3' miRNA: 3'- -UGGUGCGGuaGGaGCUGCUCGcaGGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 6563 | 0.69 | 0.329315 |
Target: 5'- cGCCGCGCUAcaaCUCGuuGAGCG-CCGa -3' miRNA: 3'- -UGGUGCGGUag-GAGCugCUCGCaGGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 8437 | 0.66 | 0.464679 |
Target: 5'- cGCCGCaGCgAUCCgcgucaacgCGAuCGAGCGcCCGg -3' miRNA: 3'- -UGGUG-CGgUAGGa--------GCU-GCUCGCaGGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 9241 | 0.71 | 0.225354 |
Target: 5'- aACUGCGCCG-CgUCGGCGAucGCGUCUAu -3' miRNA: 3'- -UGGUGCGGUaGgAGCUGCU--CGCAGGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 12814 | 0.66 | 0.484855 |
Target: 5'- uGCCAgGCCGUCgCgcgCGACGuGCuGUUCu -3' miRNA: 3'- -UGGUgCGGUAG-Ga--GCUGCuCG-CAGGu -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 15261 | 0.67 | 0.416261 |
Target: 5'- aGCCGCaGUg--CUgcgCGGCGAGCGUCCGc -3' miRNA: 3'- -UGGUG-CGguaGGa--GCUGCUCGCAGGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 16855 | 0.67 | 0.454757 |
Target: 5'- cGCCGCGCCAUCgUC--CGAGcCG-CCGc -3' miRNA: 3'- -UGGUGCGGUAGgAGcuGCUC-GCaGGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 19207 | 0.68 | 0.353934 |
Target: 5'- gGCgGCGCgGUUa-CGACGAGCGUCg- -3' miRNA: 3'- -UGgUGCGgUAGgaGCUGCUCGCAGgu -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 19573 | 0.67 | 0.442031 |
Target: 5'- gGCCGCGCCggCgUCGAgccaaCGAGCacguuguagccgucGUCCGa -3' miRNA: 3'- -UGGUGCGGuaGgAGCU-----GCUCG--------------CAGGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 24576 | 0.67 | 0.425698 |
Target: 5'- aGCCACGaCCggaaGUCCuUCGAacCGGGCG-CCAu -3' miRNA: 3'- -UGGUGC-GG----UAGG-AGCU--GCUCGCaGGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 24612 | 0.66 | 0.474713 |
Target: 5'- aGCCGCGCgG-CCgUGcCGAGCGUCUu -3' miRNA: 3'- -UGGUGCGgUaGGaGCuGCUCGCAGGu -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 26372 | 0.69 | 0.329315 |
Target: 5'- cGCgCACGaCAUCCUCGACGAacugcgacagcgGCGUgCGg -3' miRNA: 3'- -UG-GUGCgGUAGGAGCUGCU------------CGCAgGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 27346 | 0.68 | 0.379824 |
Target: 5'- cGCCACGCgCAgcggCgCgcaGACGAGCGUCg- -3' miRNA: 3'- -UGGUGCG-GUa---G-Gag-CUGCUCGCAGgu -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 27657 | 0.67 | 0.435263 |
Target: 5'- gGCC-CGCCcgCCgCGACGAGC--CCGa -3' miRNA: 3'- -UGGuGCGGuaGGaGCUGCUCGcaGGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 27716 | 0.68 | 0.365859 |
Target: 5'- cACCGCGCCggcugccgugagcgcGcCCUCGACG-GCG-CCGa -3' miRNA: 3'- -UGGUGCGG---------------UaGGAGCUGCuCGCaGGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 28967 | 0.74 | 0.163486 |
Target: 5'- cGCCGCGCCggCCUUcagcGCGAGCG-CCAu -3' miRNA: 3'- -UGGUGCGGuaGGAGc---UGCUCGCaGGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 29999 | 0.68 | 0.379824 |
Target: 5'- uGCCACGUCAccgCCUggcCGGCGAGCGa--- -3' miRNA: 3'- -UGGUGCGGUa--GGA---GCUGCUCGCaggu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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