miRNA display CGI


Results 21 - 39 of 39 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28017 3' -58.2 NC_005887.1 + 29999 0.68 0.379824
Target:  5'- uGCCACGUCAccgCCUggcCGGCGAGCGa--- -3'
miRNA:   3'- -UGGUGCGGUa--GGA---GCUGCUCGCaggu -5'
28017 3' -58.2 NC_005887.1 + 33851 0.68 0.374546
Target:  5'- cGCCACGCCGUUacgcgaCUCGAgccacgugucgucgcCGAGCGguugcgCCGg -3'
miRNA:   3'- -UGGUGCGGUAG------GAGCU---------------GCUCGCa-----GGU- -5'
28017 3' -58.2 NC_005887.1 + 276 0.68 0.370185
Target:  5'- cCCACGCgAcagcgcucgucgaUCCagUCGGCGAGCagGUCCAu -3'
miRNA:   3'- uGGUGCGgU-------------AGG--AGCUGCUCG--CAGGU- -5'
28017 3' -58.2 NC_005887.1 + 27716 0.68 0.365859
Target:  5'- cACCGCGCCggcugccgugagcgcGcCCUCGACG-GCG-CCGa -3'
miRNA:   3'- -UGGUGCGG---------------UaGGAGCUGCuCGCaGGU- -5'
28017 3' -58.2 NC_005887.1 + 34627 0.68 0.353934
Target:  5'- aGCCAuuCGCCGUUCgcgUCGACGAGgCGcgCCGg -3'
miRNA:   3'- -UGGU--GCGGUAGG---AGCUGCUC-GCa-GGU- -5'
28017 3' -58.2 NC_005887.1 + 19207 0.68 0.353934
Target:  5'- gGCgGCGCgGUUa-CGACGAGCGUCg- -3'
miRNA:   3'- -UGgUGCGgUAGgaGCUGCUCGCAGgu -5'
28017 3' -58.2 NC_005887.1 + 26372 0.69 0.329315
Target:  5'- cGCgCACGaCAUCCUCGACGAacugcgacagcgGCGUgCGg -3'
miRNA:   3'- -UG-GUGCgGUAGGAGCUGCU------------CGCAgGU- -5'
28017 3' -58.2 NC_005887.1 + 6563 0.69 0.329315
Target:  5'- cGCCGCGCUAcaaCUCGuuGAGCG-CCGa -3'
miRNA:   3'- -UGGUGCGGUag-GAGCugCUCGCaGGU- -5'
28017 3' -58.2 NC_005887.1 + 37231 0.69 0.305984
Target:  5'- gUCAUGCCGagCUUGGCGAGCaccucgucGUCCAg -3'
miRNA:   3'- uGGUGCGGUagGAGCUGCUCG--------CAGGU- -5'
28017 3' -58.2 NC_005887.1 + 34939 0.71 0.243653
Target:  5'- uGCCGuCGCCGgcuucgaaCUCGGCGGGCGUgCGc -3'
miRNA:   3'- -UGGU-GCGGUag------GAGCUGCUCGCAgGU- -5'
28017 3' -58.2 NC_005887.1 + 9241 0.71 0.225354
Target:  5'- aACUGCGCCG-CgUCGGCGAucGCGUCUAu -3'
miRNA:   3'- -UGGUGCGGUaGgAGCUGCU--CGCAGGU- -5'
28017 3' -58.2 NC_005887.1 + 38375 0.71 0.225354
Target:  5'- -gCACGCCGUCCUCGuucGCGAGCa---- -3'
miRNA:   3'- ugGUGCGGUAGGAGC---UGCUCGcaggu -5'
28017 3' -58.2 NC_005887.1 + 33423 0.72 0.219519
Target:  5'- uACCGCGaCCGagcagacgaUCCUCGACGAGC-UUCGc -3'
miRNA:   3'- -UGGUGC-GGU---------AGGAGCUGCUCGcAGGU- -5'
28017 3' -58.2 NC_005887.1 + 31342 0.73 0.192249
Target:  5'- gACCGgGCCGUCgUCGAUGGcccaCGUCCAg -3'
miRNA:   3'- -UGGUgCGGUAGgAGCUGCUc---GCAGGU- -5'
28017 3' -58.2 NC_005887.1 + 28967 0.74 0.163486
Target:  5'- cGCCGCGCCggCCUUcagcGCGAGCG-CCAu -3'
miRNA:   3'- -UGGUGCGGuaGGAGc---UGCUCGCaGGU- -5'
28017 3' -58.2 NC_005887.1 + 40596 0.74 0.163486
Target:  5'- aACC-CGCgGuUCCUCGACGAGCGUgUg -3'
miRNA:   3'- -UGGuGCGgU-AGGAGCUGCUCGCAgGu -5'
28017 3' -58.2 NC_005887.1 + 30034 0.75 0.134865
Target:  5'- cGCCgACGCCAcCCUCauaGGCGAGCG-CCAg -3'
miRNA:   3'- -UGG-UGCGGUaGGAG---CUGCUCGCaGGU- -5'
28017 3' -58.2 NC_005887.1 + 2957 0.76 0.117323
Target:  5'- cGCCGCGaCCAUCCUCGcCG-GCGacUCCAc -3'
miRNA:   3'- -UGGUGC-GGUAGGAGCuGCuCGC--AGGU- -5'
28017 3' -58.2 NC_005887.1 + 31363 1.08 0.000458
Target:  5'- cACCACGCCAUCCUCGACGAGCGUCCAg -3'
miRNA:   3'- -UGGUGCGGUAGGAGCUGCUCGCAGGU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.