Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28017 | 3' | -58.2 | NC_005887.1 | + | 29999 | 0.68 | 0.379824 |
Target: 5'- uGCCACGUCAccgCCUggcCGGCGAGCGa--- -3' miRNA: 3'- -UGGUGCGGUa--GGA---GCUGCUCGCaggu -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 33851 | 0.68 | 0.374546 |
Target: 5'- cGCCACGCCGUUacgcgaCUCGAgccacgugucgucgcCGAGCGguugcgCCGg -3' miRNA: 3'- -UGGUGCGGUAG------GAGCU---------------GCUCGCa-----GGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 276 | 0.68 | 0.370185 |
Target: 5'- cCCACGCgAcagcgcucgucgaUCCagUCGGCGAGCagGUCCAu -3' miRNA: 3'- uGGUGCGgU-------------AGG--AGCUGCUCG--CAGGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 27716 | 0.68 | 0.365859 |
Target: 5'- cACCGCGCCggcugccgugagcgcGcCCUCGACG-GCG-CCGa -3' miRNA: 3'- -UGGUGCGG---------------UaGGAGCUGCuCGCaGGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 34627 | 0.68 | 0.353934 |
Target: 5'- aGCCAuuCGCCGUUCgcgUCGACGAGgCGcgCCGg -3' miRNA: 3'- -UGGU--GCGGUAGG---AGCUGCUC-GCa-GGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 19207 | 0.68 | 0.353934 |
Target: 5'- gGCgGCGCgGUUa-CGACGAGCGUCg- -3' miRNA: 3'- -UGgUGCGgUAGgaGCUGCUCGCAGgu -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 26372 | 0.69 | 0.329315 |
Target: 5'- cGCgCACGaCAUCCUCGACGAacugcgacagcgGCGUgCGg -3' miRNA: 3'- -UG-GUGCgGUAGGAGCUGCU------------CGCAgGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 6563 | 0.69 | 0.329315 |
Target: 5'- cGCCGCGCUAcaaCUCGuuGAGCG-CCGa -3' miRNA: 3'- -UGGUGCGGUag-GAGCugCUCGCaGGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 37231 | 0.69 | 0.305984 |
Target: 5'- gUCAUGCCGagCUUGGCGAGCaccucgucGUCCAg -3' miRNA: 3'- uGGUGCGGUagGAGCUGCUCG--------CAGGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 34939 | 0.71 | 0.243653 |
Target: 5'- uGCCGuCGCCGgcuucgaaCUCGGCGGGCGUgCGc -3' miRNA: 3'- -UGGU-GCGGUag------GAGCUGCUCGCAgGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 9241 | 0.71 | 0.225354 |
Target: 5'- aACUGCGCCG-CgUCGGCGAucGCGUCUAu -3' miRNA: 3'- -UGGUGCGGUaGgAGCUGCU--CGCAGGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 38375 | 0.71 | 0.225354 |
Target: 5'- -gCACGCCGUCCUCGuucGCGAGCa---- -3' miRNA: 3'- ugGUGCGGUAGGAGC---UGCUCGcaggu -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 33423 | 0.72 | 0.219519 |
Target: 5'- uACCGCGaCCGagcagacgaUCCUCGACGAGC-UUCGc -3' miRNA: 3'- -UGGUGC-GGU---------AGGAGCUGCUCGcAGGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 31342 | 0.73 | 0.192249 |
Target: 5'- gACCGgGCCGUCgUCGAUGGcccaCGUCCAg -3' miRNA: 3'- -UGGUgCGGUAGgAGCUGCUc---GCAGGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 28967 | 0.74 | 0.163486 |
Target: 5'- cGCCGCGCCggCCUUcagcGCGAGCG-CCAu -3' miRNA: 3'- -UGGUGCGGuaGGAGc---UGCUCGCaGGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 40596 | 0.74 | 0.163486 |
Target: 5'- aACC-CGCgGuUCCUCGACGAGCGUgUg -3' miRNA: 3'- -UGGuGCGgU-AGGAGCUGCUCGCAgGu -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 30034 | 0.75 | 0.134865 |
Target: 5'- cGCCgACGCCAcCCUCauaGGCGAGCG-CCAg -3' miRNA: 3'- -UGG-UGCGGUaGGAG---CUGCUCGCaGGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 2957 | 0.76 | 0.117323 |
Target: 5'- cGCCGCGaCCAUCCUCGcCG-GCGacUCCAc -3' miRNA: 3'- -UGGUGC-GGUAGGAGCuGCuCGC--AGGU- -5' |
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28017 | 3' | -58.2 | NC_005887.1 | + | 31363 | 1.08 | 0.000458 |
Target: 5'- cACCACGCCAUCCUCGACGAGCGUCCAg -3' miRNA: 3'- -UGGUGCGGUAGGAGCUGCUCGCAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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