miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28017 5' -57.5 NC_005887.1 + 31398 1.08 0.000507
Target:  5'- gCGUGGACGCGCACAACAGCUGCGCGUa -3'
miRNA:   3'- -GCACCUGCGCGUGUUGUCGACGCGCA- -5'
28017 5' -57.5 NC_005887.1 + 14631 0.78 0.086827
Target:  5'- --aGGGCGCGCucACGGCAGCcgGCGCGg -3'
miRNA:   3'- gcaCCUGCGCG--UGUUGUCGa-CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 26431 0.75 0.129393
Target:  5'- gCG-GGaACGCGCGCuGCAGCcGCGCGa -3'
miRNA:   3'- -GCaCC-UGCGCGUGuUGUCGaCGCGCa -5'
28017 5' -57.5 NC_005887.1 + 41346 0.75 0.144728
Target:  5'- gGUGuacagcGCGCGCACGGCGGCcggcaauuUGCGCGUg -3'
miRNA:   3'- gCACc-----UGCGCGUGUUGUCG--------ACGCGCA- -5'
28017 5' -57.5 NC_005887.1 + 14850 0.74 0.170851
Target:  5'- uCGcGGGCGUGCACAccGCAGCaacaGCGCGc -3'
miRNA:   3'- -GCaCCUGCGCGUGU--UGUCGa---CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 14696 0.73 0.190538
Target:  5'- ----cGCGCGCGCGGCAGCUcaGCGCGc -3'
miRNA:   3'- gcaccUGCGCGUGUUGUCGA--CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 2659 0.72 0.206584
Target:  5'- gGUGGGCGCGgGCGAgcacaAGCaccuggUGCGCGUg -3'
miRNA:   3'- gCACCUGCGCgUGUUg----UCG------ACGCGCA- -5'
28017 5' -57.5 NC_005887.1 + 36899 0.72 0.212188
Target:  5'- gGUGGAUGCgGCAgGAgugcCAGCggGCGCGUg -3'
miRNA:   3'- gCACCUGCG-CGUgUU----GUCGa-CGCGCA- -5'
28017 5' -57.5 NC_005887.1 + 6043 0.72 0.223787
Target:  5'- cCG-GGugGUGCugGugGCAGCgGCGCGg -3'
miRNA:   3'- -GCaCCugCGCGugU--UGUCGaCGCGCa -5'
28017 5' -57.5 NC_005887.1 + 22951 0.71 0.242191
Target:  5'- uCGcGGACcgauaCGCucuGCGGCAGCUGCGCGa -3'
miRNA:   3'- -GCaCCUGc----GCG---UGUUGUCGACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 10353 0.71 0.248601
Target:  5'- aCGUGGACGCcgguaucacGUACAACGGCgUGC-CGa -3'
miRNA:   3'- -GCACCUGCG---------CGUGUUGUCG-ACGcGCa -5'
28017 5' -57.5 NC_005887.1 + 5343 0.71 0.248601
Target:  5'- aCGUGuuCGCGUACGGC--CUGCGCGUg -3'
miRNA:   3'- -GCACcuGCGCGUGUUGucGACGCGCA- -5'
28017 5' -57.5 NC_005887.1 + 2559 0.71 0.248601
Target:  5'- aGUGacGACGCGCGCAACGaucgGCGCGa -3'
miRNA:   3'- gCAC--CUGCGCGUGUUGUcga-CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 12620 0.71 0.261164
Target:  5'- cCGUGcACGCGCggcgcgugauccuGCGACgcgacggcgaguGGCUGCGCGUg -3'
miRNA:   3'- -GCACcUGCGCG-------------UGUUG------------UCGACGCGCA- -5'
28017 5' -57.5 NC_005887.1 + 15102 0.71 0.268671
Target:  5'- aCGcGGGCcgGCGCGCGauGCAGUUGCGCc- -3'
miRNA:   3'- -GCaCCUG--CGCGUGU--UGUCGACGCGca -5'
28017 5' -57.5 NC_005887.1 + 18119 0.7 0.297438
Target:  5'- --cGGACGCGCuguacGCAAcCGGCgaaGCGCGg -3'
miRNA:   3'- gcaCCUGCGCG-----UGUU-GUCGa--CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 7849 0.7 0.300442
Target:  5'- -aUGGGCGUGCaguaccacgguccggGCGACAGCUucucggGCGCGa -3'
miRNA:   3'- gcACCUGCGCG---------------UGUUGUCGA------CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 17392 0.7 0.304993
Target:  5'- uCGcGGcCGCGCGCAagGCGGCccGCGCGc -3'
miRNA:   3'- -GCaCCuGCGCGUGU--UGUCGa-CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 1492 0.7 0.304993
Target:  5'- ---cGACGCGCGCGGCGGCUuCGCc- -3'
miRNA:   3'- gcacCUGCGCGUGUUGUCGAcGCGca -5'
28017 5' -57.5 NC_005887.1 + 27355 0.7 0.312694
Target:  5'- --cGGGCG-GCACGccuGCGGcCUGCGCGg -3'
miRNA:   3'- gcaCCUGCgCGUGU---UGUC-GACGCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.