Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28017 | 5' | -57.5 | NC_005887.1 | + | 1489 | 0.69 | 0.344966 |
Target: 5'- gCGUGcGGCGCucGCGCGgcGCGGCcGUGCGg -3' miRNA: 3'- -GCAC-CUGCG--CGUGU--UGUCGaCGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 1492 | 0.7 | 0.304993 |
Target: 5'- ---cGACGCGCGCGGCGGCUuCGCc- -3' miRNA: 3'- gcacCUGCGCGUGUUGUCGAcGCGca -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 2426 | 0.67 | 0.425951 |
Target: 5'- uCGUcGACGCGCcCGGCucgauCUGCGCGg -3' miRNA: 3'- -GCAcCUGCGCGuGUUGuc---GACGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 2559 | 0.71 | 0.248601 |
Target: 5'- aGUGacGACGCGCGCAACGaucgGCGCGa -3' miRNA: 3'- gCAC--CUGCGCGUGUUGUcga-CGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 2659 | 0.72 | 0.206584 |
Target: 5'- gGUGGGCGCGgGCGAgcacaAGCaccuggUGCGCGUg -3' miRNA: 3'- gCACCUGCGCgUGUUg----UCG------ACGCGCA- -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 4132 | 0.67 | 0.455352 |
Target: 5'- --cGGccACGCGCAa---GGCUGCGCGc -3' miRNA: 3'- gcaCC--UGCGCGUguugUCGACGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 4662 | 0.66 | 0.496184 |
Target: 5'- --aGcGACGCGCA-GACcGCUGCGCa- -3' miRNA: 3'- gcaC-CUGCGCGUgUUGuCGACGCGca -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 5343 | 0.71 | 0.248601 |
Target: 5'- aCGUGuuCGCGUACGGC--CUGCGCGUg -3' miRNA: 3'- -GCACcuGCGCGUGUUGucGACGCGCA- -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 5415 | 0.69 | 0.361976 |
Target: 5'- --cGGGCG-GCGCcGCAGCgaccgGCGCGa -3' miRNA: 3'- gcaCCUGCgCGUGuUGUCGa----CGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 6043 | 0.72 | 0.223787 |
Target: 5'- cCG-GGugGUGCugGugGCAGCgGCGCGg -3' miRNA: 3'- -GCaCCugCGCGugU--UGUCGaCGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 6945 | 0.69 | 0.365447 |
Target: 5'- uCGUGGGCgaaggccgugcgcggGCGCaucgaGCAugAGCUGUGCa- -3' miRNA: 3'- -GCACCUG---------------CGCG-----UGUugUCGACGCGca -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 7849 | 0.7 | 0.300442 |
Target: 5'- -aUGGGCGUGCaguaccacgguccggGCGACAGCUucucggGCGCGa -3' miRNA: 3'- gcACCUGCGCG---------------UGUUGUCGA------CGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 10353 | 0.71 | 0.248601 |
Target: 5'- aCGUGGACGCcgguaucacGUACAACGGCgUGC-CGa -3' miRNA: 3'- -GCACCUGCG---------CGUGUUGUCG-ACGcGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 11190 | 0.66 | 0.517213 |
Target: 5'- aGUGG-CGCGaCACGAUGGUgcaggcguaUGCGCa- -3' miRNA: 3'- gCACCuGCGC-GUGUUGUCG---------ACGCGca -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 12465 | 0.67 | 0.425951 |
Target: 5'- aCGguucGACGCGCGCuucuCAGCUcGCGCu- -3' miRNA: 3'- -GCac--CUGCGCGUGuu--GUCGA-CGCGca -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 12620 | 0.71 | 0.261164 |
Target: 5'- cCGUGcACGCGCggcgcgugauccuGCGACgcgacggcgaguGGCUGCGCGUg -3' miRNA: 3'- -GCACcUGCGCG-------------UGUUG------------UCGACGCGCA- -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 12716 | 0.67 | 0.445428 |
Target: 5'- aCGcUGGuCGCGCAgCAGCAGaaUGCGCu- -3' miRNA: 3'- -GC-ACCuGCGCGU-GUUGUCg-ACGCGca -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 13943 | 0.67 | 0.435627 |
Target: 5'- ----uGCGCGCGCu-CGGCUGCGaCGUg -3' miRNA: 3'- gcaccUGCGCGUGuuGUCGACGC-GCA- -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 14103 | 0.66 | 0.485815 |
Target: 5'- aGUGGugaaGCGCcgcucGCGA-AGCUGCGCGc -3' miRNA: 3'- gCACCug--CGCG-----UGUUgUCGACGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 14631 | 0.78 | 0.086827 |
Target: 5'- --aGGGCGCGCucACGGCAGCcgGCGCGg -3' miRNA: 3'- gcaCCUGCGCG--UGUUGUCGa-CGCGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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