miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28017 5' -57.5 NC_005887.1 + 1489 0.69 0.344966
Target:  5'- gCGUGcGGCGCucGCGCGgcGCGGCcGUGCGg -3'
miRNA:   3'- -GCAC-CUGCG--CGUGU--UGUCGaCGCGCa -5'
28017 5' -57.5 NC_005887.1 + 1492 0.7 0.304993
Target:  5'- ---cGACGCGCGCGGCGGCUuCGCc- -3'
miRNA:   3'- gcacCUGCGCGUGUUGUCGAcGCGca -5'
28017 5' -57.5 NC_005887.1 + 2426 0.67 0.425951
Target:  5'- uCGUcGACGCGCcCGGCucgauCUGCGCGg -3'
miRNA:   3'- -GCAcCUGCGCGuGUUGuc---GACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 2559 0.71 0.248601
Target:  5'- aGUGacGACGCGCGCAACGaucgGCGCGa -3'
miRNA:   3'- gCAC--CUGCGCGUGUUGUcga-CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 2659 0.72 0.206584
Target:  5'- gGUGGGCGCGgGCGAgcacaAGCaccuggUGCGCGUg -3'
miRNA:   3'- gCACCUGCGCgUGUUg----UCG------ACGCGCA- -5'
28017 5' -57.5 NC_005887.1 + 4132 0.67 0.455352
Target:  5'- --cGGccACGCGCAa---GGCUGCGCGc -3'
miRNA:   3'- gcaCC--UGCGCGUguugUCGACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 4662 0.66 0.496184
Target:  5'- --aGcGACGCGCA-GACcGCUGCGCa- -3'
miRNA:   3'- gcaC-CUGCGCGUgUUGuCGACGCGca -5'
28017 5' -57.5 NC_005887.1 + 5343 0.71 0.248601
Target:  5'- aCGUGuuCGCGUACGGC--CUGCGCGUg -3'
miRNA:   3'- -GCACcuGCGCGUGUUGucGACGCGCA- -5'
28017 5' -57.5 NC_005887.1 + 5415 0.69 0.361976
Target:  5'- --cGGGCG-GCGCcGCAGCgaccgGCGCGa -3'
miRNA:   3'- gcaCCUGCgCGUGuUGUCGa----CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 6043 0.72 0.223787
Target:  5'- cCG-GGugGUGCugGugGCAGCgGCGCGg -3'
miRNA:   3'- -GCaCCugCGCGugU--UGUCGaCGCGCa -5'
28017 5' -57.5 NC_005887.1 + 6945 0.69 0.365447
Target:  5'- uCGUGGGCgaaggccgugcgcggGCGCaucgaGCAugAGCUGUGCa- -3'
miRNA:   3'- -GCACCUG---------------CGCG-----UGUugUCGACGCGca -5'
28017 5' -57.5 NC_005887.1 + 7849 0.7 0.300442
Target:  5'- -aUGGGCGUGCaguaccacgguccggGCGACAGCUucucggGCGCGa -3'
miRNA:   3'- gcACCUGCGCG---------------UGUUGUCGA------CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 10353 0.71 0.248601
Target:  5'- aCGUGGACGCcgguaucacGUACAACGGCgUGC-CGa -3'
miRNA:   3'- -GCACCUGCG---------CGUGUUGUCG-ACGcGCa -5'
28017 5' -57.5 NC_005887.1 + 11190 0.66 0.517213
Target:  5'- aGUGG-CGCGaCACGAUGGUgcaggcguaUGCGCa- -3'
miRNA:   3'- gCACCuGCGC-GUGUUGUCG---------ACGCGca -5'
28017 5' -57.5 NC_005887.1 + 12465 0.67 0.425951
Target:  5'- aCGguucGACGCGCGCuucuCAGCUcGCGCu- -3'
miRNA:   3'- -GCac--CUGCGCGUGuu--GUCGA-CGCGca -5'
28017 5' -57.5 NC_005887.1 + 12620 0.71 0.261164
Target:  5'- cCGUGcACGCGCggcgcgugauccuGCGACgcgacggcgaguGGCUGCGCGUg -3'
miRNA:   3'- -GCACcUGCGCG-------------UGUUG------------UCGACGCGCA- -5'
28017 5' -57.5 NC_005887.1 + 12716 0.67 0.445428
Target:  5'- aCGcUGGuCGCGCAgCAGCAGaaUGCGCu- -3'
miRNA:   3'- -GC-ACCuGCGCGU-GUUGUCg-ACGCGca -5'
28017 5' -57.5 NC_005887.1 + 13943 0.67 0.435627
Target:  5'- ----uGCGCGCGCu-CGGCUGCGaCGUg -3'
miRNA:   3'- gcaccUGCGCGUGuuGUCGACGC-GCA- -5'
28017 5' -57.5 NC_005887.1 + 14103 0.66 0.485815
Target:  5'- aGUGGugaaGCGCcgcucGCGA-AGCUGCGCGc -3'
miRNA:   3'- gCACCug--CGCG-----UGUUgUCGACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 14631 0.78 0.086827
Target:  5'- --aGGGCGCGCucACGGCAGCcgGCGCGg -3'
miRNA:   3'- gcaCCUGCGCG--UGUUGUCGa-CGCGCa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.