miRNA display CGI


Results 21 - 40 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28017 5' -57.5 NC_005887.1 + 19537 0.66 0.472491
Target:  5'- aCGUucGGAUGCGCcgcguagcucgugaACAACAGCgGcCGCGc -3'
miRNA:   3'- -GCA--CCUGCGCG--------------UGUUGUCGaC-GCGCa -5'
28017 5' -57.5 NC_005887.1 + 21047 0.67 0.469443
Target:  5'- gGUGGGCGUGCccgugaaugugggcgACGcCAGCaGCGCa- -3'
miRNA:   3'- gCACCUGCGCG---------------UGUuGUCGaCGCGca -5'
28017 5' -57.5 NC_005887.1 + 4132 0.67 0.455352
Target:  5'- --cGGccACGCGCAa---GGCUGCGCGc -3'
miRNA:   3'- gcaCC--UGCGCGUguugUCGACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 12716 0.67 0.445428
Target:  5'- aCGcUGGuCGCGCAgCAGCAGaaUGCGCu- -3'
miRNA:   3'- -GC-ACCuGCGCGU-GUUGUCg-ACGCGca -5'
28017 5' -57.5 NC_005887.1 + 41920 0.67 0.445428
Target:  5'- --aGGGuucgaGCGCAgCAACAGCgggcgGCGCGg -3'
miRNA:   3'- gcaCCUg----CGCGU-GUUGUCGa----CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 26062 0.67 0.435627
Target:  5'- gGUGGugcuccuggucaGCGCGU-CAGCGGCccGCGCGg -3'
miRNA:   3'- gCACC------------UGCGCGuGUUGUCGa-CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 13943 0.67 0.435627
Target:  5'- ----uGCGCGCGCu-CGGCUGCGaCGUg -3'
miRNA:   3'- gcaccUGCGCGUGuuGUCGACGC-GCA- -5'
28017 5' -57.5 NC_005887.1 + 39174 0.67 0.435627
Target:  5'- --cGGACGCGCGCGagaucccgaACAcgucggccaacuGCUGCaGCGUc -3'
miRNA:   3'- gcaCCUGCGCGUGU---------UGU------------CGACG-CGCA- -5'
28017 5' -57.5 NC_005887.1 + 12465 0.67 0.425951
Target:  5'- aCGguucGACGCGCGCuucuCAGCUcGCGCu- -3'
miRNA:   3'- -GCac--CUGCGCGUGuu--GUCGA-CGCGca -5'
28017 5' -57.5 NC_005887.1 + 2426 0.67 0.425951
Target:  5'- uCGUcGACGCGCcCGGCucgauCUGCGCGg -3'
miRNA:   3'- -GCAcCUGCGCGuGUUGuc---GACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 41962 0.68 0.416404
Target:  5'- gCGUGGuGCGUGCGCGGCGcGCU-CGCc- -3'
miRNA:   3'- -GCACC-UGCGCGUGUUGU-CGAcGCGca -5'
28017 5' -57.5 NC_005887.1 + 20146 0.68 0.416404
Target:  5'- uGUgGGAUGCGCAaacgucaAGCGGCgGCGCc- -3'
miRNA:   3'- gCA-CCUGCGCGUg------UUGUCGaCGCGca -5'
28017 5' -57.5 NC_005887.1 + 17174 0.68 0.406989
Target:  5'- gCGUGGGaGCGCGCGaacGCGGCcGCacGCGg -3'
miRNA:   3'- -GCACCUgCGCGUGU---UGUCGaCG--CGCa -5'
28017 5' -57.5 NC_005887.1 + 34251 0.68 0.397709
Target:  5'- ---cGGCGaGCGCGGCgAGCUGCGCGc -3'
miRNA:   3'- gcacCUGCgCGUGUUG-UCGACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 32522 0.68 0.379561
Target:  5'- -uUGGcCGCGCugAcCGGCUGCGaCGc -3'
miRNA:   3'- gcACCuGCGCGugUuGUCGACGC-GCa -5'
28017 5' -57.5 NC_005887.1 + 40123 0.68 0.379561
Target:  5'- --aGGACGCcUACAGCGugcggugcgcGCUGCGCGc -3'
miRNA:   3'- gcaCCUGCGcGUGUUGU----------CGACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 26229 0.68 0.370697
Target:  5'- gGUGGuuGCGCGCGGC-GCaGCGCc- -3'
miRNA:   3'- gCACCugCGCGUGUUGuCGaCGCGca -5'
28017 5' -57.5 NC_005887.1 + 6945 0.69 0.365447
Target:  5'- uCGUGGGCgaaggccgugcgcggGCGCaucgaGCAugAGCUGUGCa- -3'
miRNA:   3'- -GCACCUG---------------CGCG-----UGUugUCGACGCGca -5'
28017 5' -57.5 NC_005887.1 + 5415 0.69 0.361976
Target:  5'- --cGGGCG-GCGCcGCAGCgaccgGCGCGa -3'
miRNA:   3'- gcaCCUGCgCGUGuUGUCGa----CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 29194 0.69 0.361976
Target:  5'- --aGGAUcUGCGCGGCcuuaAGCUGCGCGa -3'
miRNA:   3'- gcaCCUGcGCGUGUUG----UCGACGCGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.