Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28017 | 5' | -57.5 | NC_005887.1 | + | 40123 | 0.68 | 0.379561 |
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Target: 5'- --aGGACGCcUACAGCGugcggugcgcGCUGCGCGc -3' miRNA: 3'- gcaCCUGCGcGUGUUGU----------CGACGCGCa -5' |
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| 28017 | 5' | -57.5 | NC_005887.1 | + | 40689 | 0.66 | 0.506652 |
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Target: 5'- -cUGG-CGCGCGCGcACGGCUG-GCa- -3' miRNA: 3'- gcACCuGCGCGUGU-UGUCGACgCGca -5' |
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| 28017 | 5' | -57.5 | NC_005887.1 | + | 41346 | 0.75 | 0.144728 |
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Target: 5'- gGUGuacagcGCGCGCACGGCGGCcggcaauuUGCGCGUg -3' miRNA: 3'- gCACc-----UGCGCGUGUUGUCG--------ACGCGCA- -5' |
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| 28017 | 5' | -57.5 | NC_005887.1 | + | 41442 | 0.69 | 0.344966 |
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Target: 5'- uCGUGGGCuauGCGCugcuCGGCAcGCcGCGCGa -3' miRNA: 3'- -GCACCUG---CGCGu---GUUGU-CGaCGCGCa -5' |
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| 28017 | 5' | -57.5 | NC_005887.1 | + | 41816 | 0.66 | 0.496184 |
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Target: 5'- --cGGcGCgGCGCGCGGCGGCcGaCGCGUu -3' miRNA: 3'- gcaCC-UG-CGCGUGUUGUCGaC-GCGCA- -5' |
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| 28017 | 5' | -57.5 | NC_005887.1 | + | 41920 | 0.67 | 0.445428 |
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Target: 5'- --aGGGuucgaGCGCAgCAACAGCgggcgGCGCGg -3' miRNA: 3'- gcaCCUg----CGCGU-GUUGUCGa----CGCGCa -5' |
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| 28017 | 5' | -57.5 | NC_005887.1 | + | 41962 | 0.68 | 0.416404 |
|
Target: 5'- gCGUGGuGCGUGCGCGGCGcGCU-CGCc- -3' miRNA: 3'- -GCACC-UGCGCGUGUUGU-CGAcGCGca -5' |
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| 28017 | 5' | -57.5 | NC_005887.1 | + | 42128 | 0.66 | 0.517213 |
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Target: 5'- uGUGGcgauccugGCGCGCAUucgcagAGCAGCgGgGCGa -3' miRNA: 3'- gCACC--------UGCGCGUG------UUGUCGaCgCGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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