miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28018 5' -53.5 NC_005887.1 + 5942 0.66 0.750418
Target:  5'- uCGGGCGAgGUGauCGauaAGcUCGCUGGcGCg -3'
miRNA:   3'- -GCUCGCUgCAU--GCg--UCaAGCGACU-CG- -5'
28018 5' -53.5 NC_005887.1 + 5814 0.68 0.64
Target:  5'- -cGGCGGCGaucgagucgGCGCGGgUCGCgaaGGGCg -3'
miRNA:   3'- gcUCGCUGCa--------UGCGUCaAGCGa--CUCG- -5'
28018 5' -53.5 NC_005887.1 + 15547 0.68 0.650138
Target:  5'- aCGGGCGACGacucgGCGCGcgcgaccgcgcucGaUUCGCUGAucGCc -3'
miRNA:   3'- -GCUCGCUGCa----UGCGU-------------C-AAGCGACU--CG- -5'
28018 5' -53.5 NC_005887.1 + 14220 0.68 0.651264
Target:  5'- aGGGCGGCGccGCGCuGUUCgGCgcGGCa -3'
miRNA:   3'- gCUCGCUGCa-UGCGuCAAG-CGacUCG- -5'
28018 5' -53.5 NC_005887.1 + 19192 0.67 0.696024
Target:  5'- gCGGGCGugGagacaggcgGCGCGGUUaCGaC-GAGCg -3'
miRNA:   3'- -GCUCGCugCa--------UGCGUCAA-GC-GaCUCG- -5'
28018 5' -53.5 NC_005887.1 + 3380 0.66 0.739743
Target:  5'- aGGGaGugGUGCGCAcgcuGUUCGCcGcGCg -3'
miRNA:   3'- gCUCgCugCAUGCGU----CAAGCGaCuCG- -5'
28018 5' -53.5 NC_005887.1 + 6867 0.66 0.739743
Target:  5'- --cGCGACGUcggccaacGCGCAGg-CGCUGAu- -3'
miRNA:   3'- gcuCGCUGCA--------UGCGUCaaGCGACUcg -5'
28018 5' -53.5 NC_005887.1 + 21278 0.66 0.739743
Target:  5'- -cGGCGGCGUAUGCGc--UGCUG-GCg -3'
miRNA:   3'- gcUCGCUGCAUGCGUcaaGCGACuCG- -5'
28018 5' -53.5 NC_005887.1 + 24124 0.66 0.739743
Target:  5'- gCGcGUGuCGUGCGguGUgaagCGCcGGGCu -3'
miRNA:   3'- -GCuCGCuGCAUGCguCAa---GCGaCUCG- -5'
28018 5' -53.5 NC_005887.1 + 4661 0.68 0.628727
Target:  5'- -cAGCGAC--GCGCAGacCGCUGcGCa -3'
miRNA:   3'- gcUCGCUGcaUGCGUCaaGCGACuCG- -5'
28018 5' -53.5 NC_005887.1 + 40114 0.68 0.6276
Target:  5'- aCGAGcCGcaggacgccuacaGCGUGCGguGcgCGCUGcGCg -3'
miRNA:   3'- -GCUC-GC-------------UGCAUGCguCaaGCGACuCG- -5'
28018 5' -53.5 NC_005887.1 + 34960 0.68 0.606203
Target:  5'- -cGGCGGgCGUGCGCAGgUUGUUGAugaagGCg -3'
miRNA:   3'- gcUCGCU-GCAUGCGUCaAGCGACU-----CG- -5'
28018 5' -53.5 NC_005887.1 + 26415 0.71 0.434905
Target:  5'- uCGAGCuGGCGgccGCGCGGgaacgcgCGCUGcAGCc -3'
miRNA:   3'- -GCUCG-CUGCa--UGCGUCaa-----GCGAC-UCG- -5'
28018 5' -53.5 NC_005887.1 + 15650 0.71 0.454926
Target:  5'- aGGGCGcCGUGuCGCAGaugCGCgccGAGCu -3'
miRNA:   3'- gCUCGCuGCAU-GCGUCaa-GCGa--CUCG- -5'
28018 5' -53.5 NC_005887.1 + 11337 0.71 0.465122
Target:  5'- --cGCGACG-GC-CGGUaCGCUGAGCa -3'
miRNA:   3'- gcuCGCUGCaUGcGUCAaGCGACUCG- -5'
28018 5' -53.5 NC_005887.1 + 18551 0.71 0.485862
Target:  5'- uGGGCGGCG-GCGcCGGcUUCGC-GGGCg -3'
miRNA:   3'- gCUCGCUGCaUGC-GUC-AAGCGaCUCG- -5'
28018 5' -53.5 NC_005887.1 + 4766 0.69 0.550464
Target:  5'- --uGCGACGaGCGCGGgaaGCUGAcGCc -3'
miRNA:   3'- gcuCGCUGCaUGCGUCaagCGACU-CG- -5'
28018 5' -53.5 NC_005887.1 + 35441 0.69 0.550464
Target:  5'- uCGAGCGACGcguagaugACGCcgaggcGUUCGUUgucGAGCa -3'
miRNA:   3'- -GCUCGCUGCa-------UGCGu-----CAAGCGA---CUCG- -5'
28018 5' -53.5 NC_005887.1 + 37443 0.69 0.583772
Target:  5'- gGAGCGcgGCGcuugccUGCGCGGUUUGCaGuGCg -3'
miRNA:   3'- gCUCGC--UGC------AUGCGUCAAGCGaCuCG- -5'
28018 5' -53.5 NC_005887.1 + 24419 0.69 0.594971
Target:  5'- aCGAGCucguuCGUGCGCAcgcaggUCGC-GAGCa -3'
miRNA:   3'- -GCUCGcu---GCAUGCGUca----AGCGaCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.