miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28019 3' -53.8 NC_005887.1 + 28749 1.15 0.000343
Target:  5'- cGCGCUGCCAGCAGCGAUGAAGUACGCg -3'
miRNA:   3'- -CGCGACGGUCGUCGCUACUUCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 32430 0.77 0.177688
Target:  5'- gGCGaugugGCCGGCGGCGAUcAGGUuGCGCa -3'
miRNA:   3'- -CGCga---CGGUCGUCGCUAcUUCA-UGCG- -5'
28019 3' -53.8 NC_005887.1 + 28336 0.76 0.221669
Target:  5'- gGCGC-GCCGGCGGuUGcgGAGGcGCGCg -3'
miRNA:   3'- -CGCGaCGGUCGUC-GCuaCUUCaUGCG- -5'
28019 3' -53.8 NC_005887.1 + 11791 0.75 0.240419
Target:  5'- uCGCUGCuCGGCGGCGucgGuucGUACGCu -3'
miRNA:   3'- cGCGACG-GUCGUCGCua-Cuu-CAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 20853 0.75 0.240419
Target:  5'- uGCGCcgauUGCCGGCGGCGAUGcGAGaUAgGUc -3'
miRNA:   3'- -CGCG----ACGGUCGUCGCUAC-UUC-AUgCG- -5'
28019 3' -53.8 NC_005887.1 + 15102 0.75 0.246957
Target:  5'- aCGCggGCCGGCGcGCGAUGcAGuUGCGCc -3'
miRNA:   3'- cGCGa-CGGUCGU-CGCUACuUC-AUGCG- -5'
28019 3' -53.8 NC_005887.1 + 26872 0.75 0.253641
Target:  5'- cGCGCgGCCAGCucgaacGCGucuuGGUGCGCg -3'
miRNA:   3'- -CGCGaCGGUCGu-----CGCuacuUCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 18787 0.74 0.289308
Target:  5'- cGCaCUGCCGGcCGGCGAUGcGGgcgGCGUc -3'
miRNA:   3'- -CGcGACGGUC-GUCGCUACuUCa--UGCG- -5'
28019 3' -53.8 NC_005887.1 + 13610 0.73 0.30464
Target:  5'- uCGCUGCUGGCAGCGcgGc---GCGCg -3'
miRNA:   3'- cGCGACGGUCGUCGCuaCuucaUGCG- -5'
28019 3' -53.8 NC_005887.1 + 25019 0.73 0.320588
Target:  5'- uGCGC-GUCAGCAuCGcgGAAGUGCaGCa -3'
miRNA:   3'- -CGCGaCGGUCGUcGCuaCUUCAUG-CG- -5'
28019 3' -53.8 NC_005887.1 + 30919 0.72 0.354333
Target:  5'- aGCGCggcaucgccuugUGCCAGCgcgcucGGCGGUGAuGUcgGCGCc -3'
miRNA:   3'- -CGCG------------ACGGUCG------UCGCUACUuCA--UGCG- -5'
28019 3' -53.8 NC_005887.1 + 13560 0.72 0.372122
Target:  5'- uGCGCUGCCgcccgAGCAggccgacgacGCGAaGGAGgcCGCg -3'
miRNA:   3'- -CGCGACGG-----UCGU----------CGCUaCUUCauGCG- -5'
28019 3' -53.8 NC_005887.1 + 2572 0.72 0.372122
Target:  5'- cCGCaugGCCgugAGCGGCGAgc-GGUACGCg -3'
miRNA:   3'- cGCGa--CGG---UCGUCGCUacuUCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 33382 0.72 0.372122
Target:  5'- cGCGCcgGCgCGGCAG-GAUGAggcucaucgcGGUGCGUa -3'
miRNA:   3'- -CGCGa-CG-GUCGUCgCUACU----------UCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 37450 0.71 0.409479
Target:  5'- gGCGCUuGCCuGC-GCGGuuUGcAGUGCGCc -3'
miRNA:   3'- -CGCGA-CGGuCGuCGCU--ACuUCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 22114 0.71 0.409479
Target:  5'- cUGCUGCCGGguGCGAuuggcucgcUGAuc-GCGCu -3'
miRNA:   3'- cGCGACGGUCguCGCU---------ACUucaUGCG- -5'
28019 3' -53.8 NC_005887.1 + 40776 0.71 0.419177
Target:  5'- cGCGCcGCCgAGcCGGCGGUcGAGGUucguggcggcgACGCg -3'
miRNA:   3'- -CGCGaCGG-UC-GUCGCUA-CUUCA-----------UGCG- -5'
28019 3' -53.8 NC_005887.1 + 2537 0.71 0.419177
Target:  5'- cGCGCUuuauCCAGCAGUGc-GAAGUgacgACGCg -3'
miRNA:   3'- -CGCGAc---GGUCGUCGCuaCUUCA----UGCG- -5'
28019 3' -53.8 NC_005887.1 + 12347 0.71 0.429013
Target:  5'- uCGCUcGCCGGCcaGGCGGUGAcGUG-GCa -3'
miRNA:   3'- cGCGA-CGGUCG--UCGCUACUuCAUgCG- -5'
28019 3' -53.8 NC_005887.1 + 29200 0.71 0.438983
Target:  5'- uGCGCgGCCuuaAGCugcGCGAUGGugaaguggauGGUAUGCa -3'
miRNA:   3'- -CGCGaCGG---UCGu--CGCUACU----------UCAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.