Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28019 | 3' | -53.8 | NC_005887.1 | + | 41588 | 0.68 | 0.567422 |
Target: 5'- cUGUcgGCCAGCGGCGGcccAGGUGCGg -3' miRNA: 3'- cGCGa-CGGUCGUCGCUac-UUCAUGCg -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 29200 | 0.71 | 0.438983 |
Target: 5'- uGCGCgGCCuuaAGCugcGCGAUGGugaaguggauGGUAUGCa -3' miRNA: 3'- -CGCGaCGG---UCGu--CGCUACU----------UCAUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 29792 | 0.7 | 0.449085 |
Target: 5'- cGCGCagcucggGCCAGUAGCug-GAAGUcugcggguguGCGCg -3' miRNA: 3'- -CGCGa------CGGUCGUCGcuaCUUCA----------UGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 37580 | 0.7 | 0.458285 |
Target: 5'- cGCGgaGCC-GCGGCGGaauucgGAucucgucAGUGCGCg -3' miRNA: 3'- -CGCgaCGGuCGUCGCUa-----CU-------UCAUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 4675 | 0.7 | 0.459314 |
Target: 5'- cCGCUGCgCAGaCGGCGAgggucUGAuggGCGCg -3' miRNA: 3'- cGCGACG-GUC-GUCGCU-----ACUucaUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 15836 | 0.7 | 0.480135 |
Target: 5'- aGCGCuUGCgCGGC-GCGAUcGAGGgaaACGCc -3' miRNA: 3'- -CGCG-ACG-GUCGuCGCUA-CUUCa--UGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 28502 | 0.69 | 0.512195 |
Target: 5'- cGCGC-GCCGGCGGgaaGAUGAcg-AUGCg -3' miRNA: 3'- -CGCGaCGGUCGUCg--CUACUucaUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 23393 | 0.69 | 0.52308 |
Target: 5'- cGCGCUGCCgcuGGCAGCc-UGcAGcaGCGCg -3' miRNA: 3'- -CGCGACGG---UCGUCGcuACuUCa-UGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 15696 | 0.69 | 0.532951 |
Target: 5'- cGCGCgGCCGGaugauuccgccgcCGGCG-UGAAGgagcugACGCg -3' miRNA: 3'- -CGCGaCGGUC-------------GUCGCuACUUCa-----UGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 15969 | 0.71 | 0.438983 |
Target: 5'- cCGCUGUC-GCAGUucgucgagGAUGucGUGCGCg -3' miRNA: 3'- cGCGACGGuCGUCG--------CUACuuCAUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 12347 | 0.71 | 0.429013 |
Target: 5'- uCGCUcGCCGGCcaGGCGGUGAcGUG-GCa -3' miRNA: 3'- cGCGA-CGGUCG--UCGCUACUuCAUgCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 40776 | 0.71 | 0.419177 |
Target: 5'- cGCGCcGCCgAGcCGGCGGUcGAGGUucguggcggcgACGCg -3' miRNA: 3'- -CGCGaCGG-UC-GUCGCUA-CUUCA-----------UGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 11791 | 0.75 | 0.240419 |
Target: 5'- uCGCUGCuCGGCGGCGucgGuucGUACGCu -3' miRNA: 3'- cGCGACG-GUCGUCGCua-Cuu-CAUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 13610 | 0.73 | 0.30464 |
Target: 5'- uCGCUGCUGGCAGCGcgGc---GCGCg -3' miRNA: 3'- cGCGACGGUCGUCGCuaCuucaUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 30919 | 0.72 | 0.354333 |
Target: 5'- aGCGCggcaucgccuugUGCCAGCgcgcucGGCGGUGAuGUcgGCGCc -3' miRNA: 3'- -CGCG------------ACGGUCG------UCGCUACUuCA--UGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 13560 | 0.72 | 0.372122 |
Target: 5'- uGCGCUGCCgcccgAGCAggccgacgacGCGAaGGAGgcCGCg -3' miRNA: 3'- -CGCGACGG-----UCGU----------CGCUaCUUCauGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 2572 | 0.72 | 0.372122 |
Target: 5'- cCGCaugGCCgugAGCGGCGAgc-GGUACGCg -3' miRNA: 3'- cGCGa--CGG---UCGUCGCUacuUCAUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 33382 | 0.72 | 0.372122 |
Target: 5'- cGCGCcgGCgCGGCAG-GAUGAggcucaucgcGGUGCGUa -3' miRNA: 3'- -CGCGa-CG-GUCGUCgCUACU----------UCAUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 22114 | 0.71 | 0.409479 |
Target: 5'- cUGCUGCCGGguGCGAuuggcucgcUGAuc-GCGCu -3' miRNA: 3'- cGCGACGGUCguCGCU---------ACUucaUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 37450 | 0.71 | 0.409479 |
Target: 5'- gGCGCUuGCCuGC-GCGGuuUGcAGUGCGCc -3' miRNA: 3'- -CGCGA-CGGuCGuCGCU--ACuUCAUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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