miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28019 3' -53.8 NC_005887.1 + 41588 0.68 0.567422
Target:  5'- cUGUcgGCCAGCGGCGGcccAGGUGCGg -3'
miRNA:   3'- cGCGa-CGGUCGUCGCUac-UUCAUGCg -5'
28019 3' -53.8 NC_005887.1 + 29200 0.71 0.438983
Target:  5'- uGCGCgGCCuuaAGCugcGCGAUGGugaaguggauGGUAUGCa -3'
miRNA:   3'- -CGCGaCGG---UCGu--CGCUACU----------UCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 29792 0.7 0.449085
Target:  5'- cGCGCagcucggGCCAGUAGCug-GAAGUcugcggguguGCGCg -3'
miRNA:   3'- -CGCGa------CGGUCGUCGcuaCUUCA----------UGCG- -5'
28019 3' -53.8 NC_005887.1 + 37580 0.7 0.458285
Target:  5'- cGCGgaGCC-GCGGCGGaauucgGAucucgucAGUGCGCg -3'
miRNA:   3'- -CGCgaCGGuCGUCGCUa-----CU-------UCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 4675 0.7 0.459314
Target:  5'- cCGCUGCgCAGaCGGCGAgggucUGAuggGCGCg -3'
miRNA:   3'- cGCGACG-GUC-GUCGCU-----ACUucaUGCG- -5'
28019 3' -53.8 NC_005887.1 + 15836 0.7 0.480135
Target:  5'- aGCGCuUGCgCGGC-GCGAUcGAGGgaaACGCc -3'
miRNA:   3'- -CGCG-ACG-GUCGuCGCUA-CUUCa--UGCG- -5'
28019 3' -53.8 NC_005887.1 + 28502 0.69 0.512195
Target:  5'- cGCGC-GCCGGCGGgaaGAUGAcg-AUGCg -3'
miRNA:   3'- -CGCGaCGGUCGUCg--CUACUucaUGCG- -5'
28019 3' -53.8 NC_005887.1 + 23393 0.69 0.52308
Target:  5'- cGCGCUGCCgcuGGCAGCc-UGcAGcaGCGCg -3'
miRNA:   3'- -CGCGACGG---UCGUCGcuACuUCa-UGCG- -5'
28019 3' -53.8 NC_005887.1 + 15696 0.69 0.532951
Target:  5'- cGCGCgGCCGGaugauuccgccgcCGGCG-UGAAGgagcugACGCg -3'
miRNA:   3'- -CGCGaCGGUC-------------GUCGCuACUUCa-----UGCG- -5'
28019 3' -53.8 NC_005887.1 + 15969 0.71 0.438983
Target:  5'- cCGCUGUC-GCAGUucgucgagGAUGucGUGCGCg -3'
miRNA:   3'- cGCGACGGuCGUCG--------CUACuuCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 12347 0.71 0.429013
Target:  5'- uCGCUcGCCGGCcaGGCGGUGAcGUG-GCa -3'
miRNA:   3'- cGCGA-CGGUCG--UCGCUACUuCAUgCG- -5'
28019 3' -53.8 NC_005887.1 + 40776 0.71 0.419177
Target:  5'- cGCGCcGCCgAGcCGGCGGUcGAGGUucguggcggcgACGCg -3'
miRNA:   3'- -CGCGaCGG-UC-GUCGCUA-CUUCA-----------UGCG- -5'
28019 3' -53.8 NC_005887.1 + 11791 0.75 0.240419
Target:  5'- uCGCUGCuCGGCGGCGucgGuucGUACGCu -3'
miRNA:   3'- cGCGACG-GUCGUCGCua-Cuu-CAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 13610 0.73 0.30464
Target:  5'- uCGCUGCUGGCAGCGcgGc---GCGCg -3'
miRNA:   3'- cGCGACGGUCGUCGCuaCuucaUGCG- -5'
28019 3' -53.8 NC_005887.1 + 30919 0.72 0.354333
Target:  5'- aGCGCggcaucgccuugUGCCAGCgcgcucGGCGGUGAuGUcgGCGCc -3'
miRNA:   3'- -CGCG------------ACGGUCG------UCGCUACUuCA--UGCG- -5'
28019 3' -53.8 NC_005887.1 + 13560 0.72 0.372122
Target:  5'- uGCGCUGCCgcccgAGCAggccgacgacGCGAaGGAGgcCGCg -3'
miRNA:   3'- -CGCGACGG-----UCGU----------CGCUaCUUCauGCG- -5'
28019 3' -53.8 NC_005887.1 + 2572 0.72 0.372122
Target:  5'- cCGCaugGCCgugAGCGGCGAgc-GGUACGCg -3'
miRNA:   3'- cGCGa--CGG---UCGUCGCUacuUCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 33382 0.72 0.372122
Target:  5'- cGCGCcgGCgCGGCAG-GAUGAggcucaucgcGGUGCGUa -3'
miRNA:   3'- -CGCGa-CG-GUCGUCgCUACU----------UCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 22114 0.71 0.409479
Target:  5'- cUGCUGCCGGguGCGAuuggcucgcUGAuc-GCGCu -3'
miRNA:   3'- cGCGACGGUCguCGCU---------ACUucaUGCG- -5'
28019 3' -53.8 NC_005887.1 + 37450 0.71 0.409479
Target:  5'- gGCGCUuGCCuGC-GCGGuuUGcAGUGCGCc -3'
miRNA:   3'- -CGCGA-CGGuCGuCGCU--ACuUCAUGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.