Results 21 - 40 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28019 | 3' | -53.8 | NC_005887.1 | + | 15879 | 0.67 | 0.624033 |
Target: 5'- gGCGCa-CCAGCAGCuc---GGUGCGCu -3' miRNA: 3'- -CGCGacGGUCGUCGcuacuUCAUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 617 | 0.68 | 0.612655 |
Target: 5'- uUGCUGCaaagaucgaAGCcGCGAUGAaAGcGCGCg -3' miRNA: 3'- cGCGACGg--------UCGuCGCUACU-UCaUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 23454 | 0.68 | 0.609244 |
Target: 5'- cGgGCUGCCGGUgccgGGCGAccagaaauaaucguUGuGGUACuGCg -3' miRNA: 3'- -CgCGACGGUCG----UCGCU--------------ACuUCAUG-CG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 8485 | 0.68 | 0.605836 |
Target: 5'- aGCGCUGUCGGCuGCcgcaggcucGUACGCc -3' miRNA: 3'- -CGCGACGGUCGuCGcuacuu---CAUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 32766 | 0.68 | 0.601294 |
Target: 5'- cGCGC-GCCAuGCAGCcggcucGUGCGCa -3' miRNA: 3'- -CGCGaCGGU-CGUCGcuacuuCAUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 30331 | 0.68 | 0.601294 |
Target: 5'- -gGUUGCgAGCGGCG-UGc-GUGCGCc -3' miRNA: 3'- cgCGACGgUCGUCGCuACuuCAUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 18379 | 0.68 | 0.601294 |
Target: 5'- cGCGCU-CgAGCAGUGGgccGAGGUcgucggugcguGCGCa -3' miRNA: 3'- -CGCGAcGgUCGUCGCUa--CUUCA-----------UGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 37701 | 0.68 | 0.589962 |
Target: 5'- aGCGaC-GCCGGgGGCGAUcAGGUucaGCGCg -3' miRNA: 3'- -CGC-GaCGGUCgUCGCUAcUUCA---UGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 20769 | 0.68 | 0.589962 |
Target: 5'- cGUGCcgacgaUGCCGGCAGUacugGAUGgcGUaauuGCGCc -3' miRNA: 3'- -CGCG------ACGGUCGUCG----CUACuuCA----UGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 6491 | 0.68 | 0.589962 |
Target: 5'- gGUGuCUGCCgAGCgcaauccgcaGGCGAUGAucUACGCc -3' miRNA: 3'- -CGC-GACGG-UCG----------UCGCUACUucAUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 31043 | 0.68 | 0.578668 |
Target: 5'- gGCGCUcgcugccgaGCCGGCcgcuGCGAgcaGAGGUagaaACGCc -3' miRNA: 3'- -CGCGA---------CGGUCGu---CGCUa--CUUCA----UGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 38744 | 0.68 | 0.567422 |
Target: 5'- aGCGCUGCgCGGCcuGGCGcaacGUGAGcucccacugcacGUGCGUc -3' miRNA: 3'- -CGCGACG-GUCG--UCGC----UACUU------------CAUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 41588 | 0.68 | 0.567422 |
Target: 5'- cUGUcgGCCAGCGGCGGcccAGGUGCGg -3' miRNA: 3'- cGCGa-CGGUCGUCGCUac-UUCAUGCg -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 1677 | 0.68 | 0.564058 |
Target: 5'- cGCGC-GCCAGguGCaggauggugcggccGGUGAucgGCGCg -3' miRNA: 3'- -CGCGaCGGUCguCG--------------CUACUucaUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 26209 | 0.68 | 0.556231 |
Target: 5'- gGCGC-GCCGGUgguuGGCGggGuGGUuGCGCg -3' miRNA: 3'- -CGCGaCGGUCG----UCGCuaCuUCA-UGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 9074 | 0.68 | 0.556231 |
Target: 5'- aGUGC-GCCGGCugcGGCGGgacGAAGUuuCGCg -3' miRNA: 3'- -CGCGaCGGUCG---UCGCUa--CUUCAu-GCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 12434 | 0.68 | 0.556231 |
Target: 5'- uGCGCgagGCCcGCGGCaugugGGAGUGgGCc -3' miRNA: 3'- -CGCGa--CGGuCGUCGcua--CUUCAUgCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 30254 | 0.69 | 0.545105 |
Target: 5'- uGCGCgGCCAGCAcGuCGGUGAccugaccgAGcgACGUg -3' miRNA: 3'- -CGCGaCGGUCGU-C-GCUACU--------UCa-UGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 30009 | 0.69 | 0.534052 |
Target: 5'- cCGCcugGCCGGCgAGCGAc---GUACGCa -3' miRNA: 3'- cGCGa--CGGUCG-UCGCUacuuCAUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 15696 | 0.69 | 0.532951 |
Target: 5'- cGCGCgGCCGGaugauuccgccgcCGGCG-UGAAGgagcugACGCg -3' miRNA: 3'- -CGCGaCGGUC-------------GUCGCuACUUCa-----UGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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