miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28019 5' -62.7 NC_005887.1 + 28783 1.11 0.000104
Target:  5'- uUCGCGUCGUCGGCCUGCUCGGGCGGCa -3'
miRNA:   3'- -AGCGCAGCAGCCGGACGAGCCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 26977 0.79 0.037316
Target:  5'- gCGCGgCGUCGaCCUGCUCGGGCGuCa -3'
miRNA:   3'- aGCGCaGCAGCcGGACGAGCCCGCcG- -5'
28019 5' -62.7 NC_005887.1 + 18779 0.78 0.04419
Target:  5'- gUCGCGUucgcacUGcCGGCCgGCgaugCGGGCGGCg -3'
miRNA:   3'- -AGCGCA------GCaGCCGGaCGa---GCCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 28699 0.77 0.053779
Target:  5'- aUCGCGUucugcaCGUCGGUgCUGCUCGGcugaguGCGGCc -3'
miRNA:   3'- -AGCGCA------GCAGCCG-GACGAGCC------CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 1388 0.75 0.065195
Target:  5'- gUCGCGcUCGUUcaucaugGGCCcGCUCGGcaGCGGCa -3'
miRNA:   3'- -AGCGC-AGCAG-------CCGGaCGAGCC--CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 2421 0.74 0.081588
Target:  5'- gCGCGUCGUCGacgcGCCcgGCUCGaucugcGCGGCa -3'
miRNA:   3'- aGCGCAGCAGC----CGGa-CGAGCc-----CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 22278 0.74 0.086205
Target:  5'- -gGCGaucggauuucUCGUCGGCCUGUUCGGucUGGCa -3'
miRNA:   3'- agCGC----------AGCAGCCGGACGAGCCc-GCCG- -5'
28019 5' -62.7 NC_005887.1 + 1912 0.74 0.091071
Target:  5'- aCGCGUUcuuUCGGCa-GC-CGGGCGGCg -3'
miRNA:   3'- aGCGCAGc--AGCCGgaCGaGCCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 14196 0.73 0.098861
Target:  5'- gCGCuGUCGggcgCGGCCUcGgaCaGGGCGGCg -3'
miRNA:   3'- aGCG-CAGCa---GCCGGA-CgaG-CCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 28026 0.73 0.099946
Target:  5'- cCGCGUucaccugcuugucggCGUCGGCCUGCgcuugCGGGUucaGCg -3'
miRNA:   3'- aGCGCA---------------GCAGCCGGACGa----GCCCGc--CG- -5'
28019 5' -62.7 NC_005887.1 + 20479 0.73 0.101595
Target:  5'- aUGUGUUGaUGG-CUGCUCaGGGCGGCg -3'
miRNA:   3'- aGCGCAGCaGCCgGACGAG-CCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 28443 0.73 0.107278
Target:  5'- cUCGCGaagcugacccuUCGUCGGCUUGUUgcCGGGCcGCu -3'
miRNA:   3'- -AGCGC-----------AGCAGCCGGACGA--GCCCGcCG- -5'
28019 5' -62.7 NC_005887.1 + 30222 0.72 0.112951
Target:  5'- gCGCGaCGgCGGCCUGCUCGuccuggcgcuucuGcGCGGCc -3'
miRNA:   3'- aGCGCaGCaGCCGGACGAGC-------------C-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 41273 0.72 0.113258
Target:  5'- -gGCGcCGUCGaCCUGCgcaCGGGCGcGCu -3'
miRNA:   3'- agCGCaGCAGCcGGACGa--GCCCGC-CG- -5'
28019 5' -62.7 NC_005887.1 + 977 0.71 0.129595
Target:  5'- gUCGCG-Ca-CGGUCUGCUCGaacgcuucccGGCGGCg -3'
miRNA:   3'- -AGCGCaGcaGCCGGACGAGC----------CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 8914 0.71 0.136721
Target:  5'- aCGCGaagcUCGUCGaggaucGUCUGCUCGGucGCGGUa -3'
miRNA:   3'- aGCGC----AGCAGC------CGGACGAGCC--CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 1557 0.71 0.141921
Target:  5'- gCGCGUCGcCGccacgaaccucgaccGCCgGCUC-GGCGGCg -3'
miRNA:   3'- aGCGCAGCaGC---------------CGGaCGAGcCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 35033 0.71 0.144205
Target:  5'- gUCGUGUUGUCGGCg-GCgaCGGaCGGCg -3'
miRNA:   3'- -AGCGCAGCAGCCGgaCGa-GCCcGCCG- -5'
28019 5' -62.7 NC_005887.1 + 29409 0.71 0.144205
Target:  5'- -aGCGUCG-CGGCUUGCU---GCGGCa -3'
miRNA:   3'- agCGCAGCaGCCGGACGAgccCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 11923 0.71 0.148086
Target:  5'- cCGCcccgaCGUCGGCCUGauggugggcgaaCUCGGcGUGGCg -3'
miRNA:   3'- aGCGca---GCAGCCGGAC------------GAGCC-CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.