miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28019 5' -62.7 NC_005887.1 + 23945 0.68 0.237636
Target:  5'- cUCGCGgcgucugCGcacgcaccgacgaccUCGGCCcacUGCUCGagcgcgaGGCGGCg -3'
miRNA:   3'- -AGCGCa------GC---------------AGCCGG---ACGAGC-------CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 28328 0.69 0.187497
Target:  5'- -aGCcuGUUGUCGGCguCUGCgcCGGcGCGGCa -3'
miRNA:   3'- agCG--CAGCAGCCG--GACGa-GCC-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 35735 0.69 0.206226
Target:  5'- gUCGCgGUCGU-GGCCcacucGCUCGGcuucucguucacgcGCGGCu -3'
miRNA:   3'- -AGCG-CAGCAgCCGGa----CGAGCC--------------CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 40014 0.69 0.207814
Target:  5'- gUCGCGgugCGcaucaUGGCgCgGCUCGaGGCGGCc -3'
miRNA:   3'- -AGCGCa--GCa----GCCG-GaCGAGC-CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 35545 0.68 0.218669
Target:  5'- -aGCGcCGaUGGUCUGCUCGacauguGCGGCg -3'
miRNA:   3'- agCGCaGCaGCCGGACGAGCc-----CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 40775 0.68 0.218669
Target:  5'- gCGCGcCGcCGaGCCggcggucgagGUUCGuGGCGGCg -3'
miRNA:   3'- aGCGCaGCaGC-CGGa---------CGAGC-CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 21808 0.68 0.224276
Target:  5'- aCGaCGUcCG-CGGCgCUGC-CGGGCGcGCc -3'
miRNA:   3'- aGC-GCA-GCaGCCG-GACGaGCCCGC-CG- -5'
28019 5' -62.7 NC_005887.1 + 22772 0.68 0.235856
Target:  5'- aCGUGcUCGUUGGCUcgacGC-CGGcGCGGCc -3'
miRNA:   3'- aGCGC-AGCAGCCGGa---CGaGCC-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 34706 0.68 0.235856
Target:  5'- -gGcCGUCGUCGcGCUUGCggUGcGCGGCg -3'
miRNA:   3'- agC-GCAGCAGC-CGGACGa-GCcCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 33929 0.7 0.179871
Target:  5'- uUCGCGUCGaccugccgacggcgcUCGGCgaGCacgUCGcGuGCGGCg -3'
miRNA:   3'- -AGCGCAGC---------------AGCCGgaCG---AGC-C-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 17243 0.7 0.175246
Target:  5'- aUCGCGUaCGgcggcgucaauaagaUCGuGCCggGCgagacgUCGGGCGGCg -3'
miRNA:   3'- -AGCGCA-GC---------------AGC-CGGa-CG------AGCCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 3445 0.7 0.168508
Target:  5'- -gGCG-CGaccuaccagagcaUCGGUCUGUUCGGGCcuGGCg -3'
miRNA:   3'- agCGCaGC-------------AGCCGGACGAGCCCG--CCG- -5'
28019 5' -62.7 NC_005887.1 + 22278 0.74 0.086205
Target:  5'- -gGCGaucggauuucUCGUCGGCCUGUUCGGucUGGCa -3'
miRNA:   3'- agCGC----------AGCAGCCGGACGAGCCc-GCCG- -5'
28019 5' -62.7 NC_005887.1 + 1912 0.74 0.091071
Target:  5'- aCGCGUUcuuUCGGCa-GC-CGGGCGGCg -3'
miRNA:   3'- aGCGCAGc--AGCCGgaCGaGCCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 14196 0.73 0.098861
Target:  5'- gCGCuGUCGggcgCGGCCUcGgaCaGGGCGGCg -3'
miRNA:   3'- aGCG-CAGCa---GCCGGA-CgaG-CCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 20479 0.73 0.101595
Target:  5'- aUGUGUUGaUGG-CUGCUCaGGGCGGCg -3'
miRNA:   3'- aGCGCAGCaGCCgGACGAG-CCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 28443 0.73 0.107278
Target:  5'- cUCGCGaagcugacccuUCGUCGGCUUGUUgcCGGGCcGCu -3'
miRNA:   3'- -AGCGC-----------AGCAGCCGGACGA--GCCCGcCG- -5'
28019 5' -62.7 NC_005887.1 + 41273 0.72 0.113258
Target:  5'- -gGCGcCGUCGaCCUGCgcaCGGGCGcGCu -3'
miRNA:   3'- agCGCaGCAGCcGGACGa--GCCCGC-CG- -5'
28019 5' -62.7 NC_005887.1 + 18586 0.7 0.15166
Target:  5'- gUCGCGgcguuccaGUCGGCCgauuacgguucguUGCUCGgcagcgcgaucGGCGGCc -3'
miRNA:   3'- -AGCGCag------CAGCCGG-------------ACGAGC-----------CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 4500 0.7 0.160305
Target:  5'- gCGCGcaUCG-CGcGUCUGCUCGccgacuacGGCGGCg -3'
miRNA:   3'- aGCGC--AGCaGC-CGGACGAGC--------CCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.