miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28019 5' -62.7 NC_005887.1 + 29763 0.67 0.254162
Target:  5'- -aGCGUCG-CGGCCgGgUCGG-CGGa -3'
miRNA:   3'- agCGCAGCaGCCGGaCgAGCCcGCCg -5'
28019 5' -62.7 NC_005887.1 + 30908 0.67 0.254162
Target:  5'- gCGCGUUGcgauccaugaucgCGGCCUGUUgCGcucagacgaugccuuGGCGGCg -3'
miRNA:   3'- aGCGCAGCa------------GCCGGACGA-GC---------------CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 32657 0.67 0.254162
Target:  5'- aUCGCugaGUCaUCGGUCUGCU-GGuCGGCg -3'
miRNA:   3'- -AGCG---CAGcAGCCGGACGAgCCcGCCG- -5'
28019 5' -62.7 NC_005887.1 + 30744 0.67 0.247934
Target:  5'- uUCGCGacuucgcCGUCGGUCaGCUCGaccgugcgcGCGGCg -3'
miRNA:   3'- -AGCGCa------GCAGCCGGaCGAGCc--------CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 27357 0.67 0.247934
Target:  5'- -gGCGgcaCGccugCGGCCUGCgCGGccugcGCGGCg -3'
miRNA:   3'- agCGCa--GCa---GCCGGACGaGCC-----CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 36925 0.67 0.247934
Target:  5'- gCGCGUgGUCGcGCC-GgUCGcuGCGGCg -3'
miRNA:   3'- aGCGCAgCAGC-CGGaCgAGCc-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 34272 0.67 0.246704
Target:  5'- cUCGCGgcuugcgcaugcCGUC-GCCgUGCggcugacugCGGGCGGCa -3'
miRNA:   3'- -AGCGCa-----------GCAGcCGG-ACGa--------GCCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 23945 0.68 0.237636
Target:  5'- cUCGCGgcgucugCGcacgcaccgacgaccUCGGCCcacUGCUCGagcgcgaGGCGGCg -3'
miRNA:   3'- -AGCGCa------GC---------------AGCCGG---ACGAGC-------CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 34706 0.68 0.235856
Target:  5'- -gGcCGUCGUCGcGCUUGCggUGcGCGGCg -3'
miRNA:   3'- agC-GCAGCAGC-CGGACGa-GCcCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 22772 0.68 0.235856
Target:  5'- aCGUGcUCGUUGGCUcgacGC-CGGcGCGGCc -3'
miRNA:   3'- aGCGC-AGCAGCCGGa---CGaGCC-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 39303 0.68 0.230004
Target:  5'- uUCGCGUCGUCguucgucauuGGCCgaGCaUGGcuuugcccGCGGCg -3'
miRNA:   3'- -AGCGCAGCAG----------CCGGa-CGaGCC--------CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 39992 0.68 0.230004
Target:  5'- --uCGUCGUCGGCCUGCgagCGcuGGUcGCc -3'
miRNA:   3'- agcGCAGCAGCCGGACGa--GC--CCGcCG- -5'
28019 5' -62.7 NC_005887.1 + 18155 0.68 0.230004
Target:  5'- aCGCa-CGUCGGCaacacgacGCUgUGGGCGGCu -3'
miRNA:   3'- aGCGcaGCAGCCGga------CGA-GCCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 21808 0.68 0.224276
Target:  5'- aCGaCGUcCG-CGGCgCUGC-CGGGCGcGCc -3'
miRNA:   3'- aGC-GCA-GCaGCCG-GACGaGCCCGC-CG- -5'
28019 5' -62.7 NC_005887.1 + 18884 0.68 0.224276
Target:  5'- -gGCGUCGcCGGCUgccggGCUucCGGuggaaGCGGCg -3'
miRNA:   3'- agCGCAGCaGCCGGa----CGA--GCC-----CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 40775 0.68 0.218669
Target:  5'- gCGCGcCGcCGaGCCggcggucgagGUUCGuGGCGGCg -3'
miRNA:   3'- aGCGCaGCaGC-CGGa---------CGAGC-CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 35545 0.68 0.218669
Target:  5'- -aGCGcCGaUGGUCUGCUCGacauguGCGGCg -3'
miRNA:   3'- agCGCaGCaGCCGGACGAGCc-----CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 40014 0.69 0.207814
Target:  5'- gUCGCGgugCGcaucaUGGCgCgGCUCGaGGCGGCc -3'
miRNA:   3'- -AGCGCa--GCa----GCCG-GaCGAGC-CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 35735 0.69 0.206226
Target:  5'- gUCGCgGUCGU-GGCCcacucGCUCGGcuucucguucacgcGCGGCu -3'
miRNA:   3'- -AGCG-CAGCAgCCGGa----CGAGCC--------------CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 20845 0.69 0.197427
Target:  5'- -gGCGUCGUUGcGCCgauUGC-C-GGCGGCg -3'
miRNA:   3'- agCGCAGCAGC-CGG---ACGaGcCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.