Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28019 | 5' | -62.7 | NC_005887.1 | + | 29763 | 0.67 | 0.254162 |
Target: 5'- -aGCGUCG-CGGCCgGgUCGG-CGGa -3' miRNA: 3'- agCGCAGCaGCCGGaCgAGCCcGCCg -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 30908 | 0.67 | 0.254162 |
Target: 5'- gCGCGUUGcgauccaugaucgCGGCCUGUUgCGcucagacgaugccuuGGCGGCg -3' miRNA: 3'- aGCGCAGCa------------GCCGGACGA-GC---------------CCGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 32657 | 0.67 | 0.254162 |
Target: 5'- aUCGCugaGUCaUCGGUCUGCU-GGuCGGCg -3' miRNA: 3'- -AGCG---CAGcAGCCGGACGAgCCcGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 30744 | 0.67 | 0.247934 |
Target: 5'- uUCGCGacuucgcCGUCGGUCaGCUCGaccgugcgcGCGGCg -3' miRNA: 3'- -AGCGCa------GCAGCCGGaCGAGCc--------CGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 27357 | 0.67 | 0.247934 |
Target: 5'- -gGCGgcaCGccugCGGCCUGCgCGGccugcGCGGCg -3' miRNA: 3'- agCGCa--GCa---GCCGGACGaGCC-----CGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 36925 | 0.67 | 0.247934 |
Target: 5'- gCGCGUgGUCGcGCC-GgUCGcuGCGGCg -3' miRNA: 3'- aGCGCAgCAGC-CGGaCgAGCc-CGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 34272 | 0.67 | 0.246704 |
Target: 5'- cUCGCGgcuugcgcaugcCGUC-GCCgUGCggcugacugCGGGCGGCa -3' miRNA: 3'- -AGCGCa-----------GCAGcCGG-ACGa--------GCCCGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 23945 | 0.68 | 0.237636 |
Target: 5'- cUCGCGgcgucugCGcacgcaccgacgaccUCGGCCcacUGCUCGagcgcgaGGCGGCg -3' miRNA: 3'- -AGCGCa------GC---------------AGCCGG---ACGAGC-------CCGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 34706 | 0.68 | 0.235856 |
Target: 5'- -gGcCGUCGUCGcGCUUGCggUGcGCGGCg -3' miRNA: 3'- agC-GCAGCAGC-CGGACGa-GCcCGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 22772 | 0.68 | 0.235856 |
Target: 5'- aCGUGcUCGUUGGCUcgacGC-CGGcGCGGCc -3' miRNA: 3'- aGCGC-AGCAGCCGGa---CGaGCC-CGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 39303 | 0.68 | 0.230004 |
Target: 5'- uUCGCGUCGUCguucgucauuGGCCgaGCaUGGcuuugcccGCGGCg -3' miRNA: 3'- -AGCGCAGCAG----------CCGGa-CGaGCC--------CGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 39992 | 0.68 | 0.230004 |
Target: 5'- --uCGUCGUCGGCCUGCgagCGcuGGUcGCc -3' miRNA: 3'- agcGCAGCAGCCGGACGa--GC--CCGcCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 18155 | 0.68 | 0.230004 |
Target: 5'- aCGCa-CGUCGGCaacacgacGCUgUGGGCGGCu -3' miRNA: 3'- aGCGcaGCAGCCGga------CGA-GCCCGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 21808 | 0.68 | 0.224276 |
Target: 5'- aCGaCGUcCG-CGGCgCUGC-CGGGCGcGCc -3' miRNA: 3'- aGC-GCA-GCaGCCG-GACGaGCCCGC-CG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 18884 | 0.68 | 0.224276 |
Target: 5'- -gGCGUCGcCGGCUgccggGCUucCGGuggaaGCGGCg -3' miRNA: 3'- agCGCAGCaGCCGGa----CGA--GCC-----CGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 40775 | 0.68 | 0.218669 |
Target: 5'- gCGCGcCGcCGaGCCggcggucgagGUUCGuGGCGGCg -3' miRNA: 3'- aGCGCaGCaGC-CGGa---------CGAGC-CCGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 35545 | 0.68 | 0.218669 |
Target: 5'- -aGCGcCGaUGGUCUGCUCGacauguGCGGCg -3' miRNA: 3'- agCGCaGCaGCCGGACGAGCc-----CGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 40014 | 0.69 | 0.207814 |
Target: 5'- gUCGCGgugCGcaucaUGGCgCgGCUCGaGGCGGCc -3' miRNA: 3'- -AGCGCa--GCa----GCCG-GaCGAGC-CCGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 35735 | 0.69 | 0.206226 |
Target: 5'- gUCGCgGUCGU-GGCCcacucGCUCGGcuucucguucacgcGCGGCu -3' miRNA: 3'- -AGCG-CAGCAgCCGGa----CGAGCC--------------CGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 20845 | 0.69 | 0.197427 |
Target: 5'- -gGCGUCGUUGcGCCgauUGC-C-GGCGGCg -3' miRNA: 3'- agCGCAGCAGC-CGG---ACGaGcCCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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