Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 2802 | 3' | -51 | NC_001491.2 | + | 60666 | 0.66 | 0.993844 |
|
Target: 5'- --cUCGCCGGCccCGucGUcGGUAUCc -3' miRNA: 3'- ggaAGCGGCCGaaGCucCAuUCAUAG- -5' |
|||||||
| 2802 | 3' | -51 | NC_001491.2 | + | 45310 | 0.66 | 0.992892 |
|
Target: 5'- uCCUUgGCCGGCUUUGGGa-------- -3' miRNA: 3'- -GGAAgCGGCCGAAGCUCcauucauag -5' |
|||||||
| 2802 | 3' | -51 | NC_001491.2 | + | 119154 | 0.67 | 0.986241 |
|
Target: 5'- uCCUUCuUCGGCUUgCGgAGGUAAGa--- -3' miRNA: 3'- -GGAAGcGGCCGAA-GC-UCCAUUCauag -5' |
|||||||
| 2802 | 3' | -51 | NC_001491.2 | + | 79263 | 0.68 | 0.972917 |
|
Target: 5'- ---gUGCCGGCUg-GGGGUAGG-GUCa -3' miRNA: 3'- ggaaGCGGCCGAagCUCCAUUCaUAG- -5' |
|||||||
| 2802 | 3' | -51 | NC_001491.2 | + | 114246 | 0.76 | 0.682306 |
|
Target: 5'- cCCUcCGCCGcGCUcccaucaagaUCGAGGU-GGUGUCg -3' miRNA: 3'- -GGAaGCGGC-CGA----------AGCUCCAuUCAUAG- -5' |
|||||||
| 2802 | 3' | -51 | NC_001491.2 | + | 144254 | 0.97 | 0.049168 |
|
Target: 5'- gCCUUCGCCGGCUUCGA-GUAAGUAUCc -3' miRNA: 3'- -GGAAGCGGCCGAAGCUcCAUUCAUAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home