miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2802 5' -59 NC_001491.2 + 118402 0.66 0.80407
Target:  5'- cCGAgccCCGCggAGGgaaggCGAAGCGGucgcCCUCg -3'
miRNA:   3'- aGCU---GGCGa-UCCa----GCUUCGCCc---GGAG- -5'
2802 5' -59 NC_001491.2 + 146616 0.66 0.795288
Target:  5'- cCG-CCGCggAGG-CGcAGGaGGGCCUCg -3'
miRNA:   3'- aGCuGGCGa-UCCaGC-UUCgCCCGGAG- -5'
2802 5' -59 NC_001491.2 + 144491 0.66 0.786364
Target:  5'- gUGGCCGgUggcgGGGUucCGcGGCGGGCgCUCg -3'
miRNA:   3'- aGCUGGCgA----UCCA--GCuUCGCCCG-GAG- -5'
2802 5' -59 NC_001491.2 + 144723 0.66 0.777306
Target:  5'- cUGGCUGCcguacagcAGGUCGGgcgcGGCGGGCUg- -3'
miRNA:   3'- aGCUGGCGa-------UCCAGCU----UCGCCCGGag -5'
2802 5' -59 NC_001491.2 + 118996 0.66 0.768124
Target:  5'- uUCGACCuaGC--GGUCGAAGCGcGGuggggauacuuaCCUCg -3'
miRNA:   3'- -AGCUGG--CGauCCAGCUUCGC-CC------------GGAG- -5'
2802 5' -59 NC_001491.2 + 145676 0.66 0.768124
Target:  5'- cUCGGCCGgugccuggguCUGGGUCuGggGUauGGGUCUg -3'
miRNA:   3'- -AGCUGGC----------GAUCCAG-CuuCG--CCCGGAg -5'
2802 5' -59 NC_001491.2 + 116459 0.67 0.74942
Target:  5'- -gGACCu---GGUCG-AGCGGGCCa- -3'
miRNA:   3'- agCUGGcgauCCAGCuUCGCCCGGag -5'
2802 5' -59 NC_001491.2 + 144675 0.67 0.74942
Target:  5'- uUCGGCCGCgcuGGcugcgCGGaugAGgGGGuCCUCg -3'
miRNA:   3'- -AGCUGGCGau-CCa----GCU---UCgCCC-GGAG- -5'
2802 5' -59 NC_001491.2 + 147745 0.67 0.720642
Target:  5'- -gGGCCGggGGGcCGcugcAGCGGGCCg- -3'
miRNA:   3'- agCUGGCgaUCCaGCu---UCGCCCGGag -5'
2802 5' -59 NC_001491.2 + 115817 0.67 0.720642
Target:  5'- cCGGCgGCccAGGcCGGAGCcucGGCCUCc -3'
miRNA:   3'- aGCUGgCGa-UCCaGCUUCGc--CCGGAG- -5'
2802 5' -59 NC_001491.2 + 146499 0.67 0.720642
Target:  5'- gCGGCCGCggcagccuuGcGUCGggGCccgaGGGCCg- -3'
miRNA:   3'- aGCUGGCGau-------C-CAGCuuCG----CCCGGag -5'
2802 5' -59 NC_001491.2 + 117601 0.68 0.681291
Target:  5'- aUCGGCUcugGCgggAGcGUCGAagcgcaAGCGGGCCa- -3'
miRNA:   3'- -AGCUGG---CGa--UC-CAGCU------UCGCCCGGag -5'
2802 5' -59 NC_001491.2 + 45712 0.7 0.561479
Target:  5'- aCGGCCGCUugagGGGUCGucGGUGGGagaaUCg -3'
miRNA:   3'- aGCUGGCGA----UCCAGCu-UCGCCCgg--AG- -5'
2802 5' -59 NC_001491.2 + 148793 0.7 0.561479
Target:  5'- gUCGAcCCGCgGGGcUCGGcGGCGGggaGCCUCg -3'
miRNA:   3'- -AGCU-GGCGaUCC-AGCU-UCGCC---CGGAG- -5'
2802 5' -59 NC_001491.2 + 123289 0.73 0.387993
Target:  5'- gCGGCCGCUGacUCGgcGUGGGUCUCc -3'
miRNA:   3'- aGCUGGCGAUccAGCuuCGCCCGGAG- -5'
2802 5' -59 NC_001491.2 + 147266 0.76 0.271958
Target:  5'- gCGGCCGCcugAGG--GGAGCGGGCCUUc -3'
miRNA:   3'- aGCUGGCGa--UCCagCUUCGCCCGGAG- -5'
2802 5' -59 NC_001491.2 + 144218 1.1 0.001285
Target:  5'- uUCGACCGCUAGGUCGAAGCGGGCCUCg -3'
miRNA:   3'- -AGCUGGCGAUCCAGCUUCGCCCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.