Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28020 | 3' | -50.8 | NC_005887.1 | + | 18564 | 0.66 | 0.867085 |
Target: 5'- -cGGCuUCGCGGGCgacaUGCUcgUCGCGgcGUu -3' miRNA: 3'- caUCG-AGCGCUUG----ACGA--AGUGCuuCA- -5' |
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28020 | 3' | -50.8 | NC_005887.1 | + | 22703 | 0.66 | 0.863653 |
Target: 5'- cGUAGCUCGcCGGAucCUGCgcuauaccagccaUCACGAcGGUg -3' miRNA: 3'- -CAUCGAGC-GCUU--GACGa------------AGUGCU-UCA- -5' |
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28020 | 3' | -50.8 | NC_005887.1 | + | 28565 | 0.66 | 0.858425 |
Target: 5'- --uGUUCGCGGcggugacCUGCUUCACGgcGc -3' miRNA: 3'- cauCGAGCGCUu------GACGAAGUGCuuCa -5' |
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28020 | 3' | -50.8 | NC_005887.1 | + | 29406 | 0.66 | 0.854885 |
Target: 5'- uGUAGCgUCGCGGcuuGCUGCggcagggacgcgcUCGCGAAa- -3' miRNA: 3'- -CAUCG-AGCGCU---UGACGa------------AGUGCUUca -5' |
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28020 | 3' | -50.8 | NC_005887.1 | + | 28245 | 0.66 | 0.840312 |
Target: 5'- -cAGCuUCGCGAGCggcGCUUCACc---- -3' miRNA: 3'- caUCG-AGCGCUUGa--CGAAGUGcuuca -5' |
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28020 | 3' | -50.8 | NC_005887.1 | + | 9637 | 0.66 | 0.839381 |
Target: 5'- gGUGGCUCGCGAugucgguguCUGCcgacuucgagacgUUCaagACGAAGg -3' miRNA: 3'- -CAUCGAGCGCUu--------GACG-------------AAG---UGCUUCa -5' |
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28020 | 3' | -50.8 | NC_005887.1 | + | 26352 | 0.66 | 0.830881 |
Target: 5'- -cGGCUCGCGGcggguCUGCgcgcgCACGAc-- -3' miRNA: 3'- caUCGAGCGCUu----GACGaa---GUGCUuca -5' |
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28020 | 3' | -50.8 | NC_005887.1 | + | 15761 | 0.67 | 0.797121 |
Target: 5'- -cAGCUCGCGAACgGCgccgucuacaagCAgGAGGa -3' miRNA: 3'- caUCGAGCGCUUGaCGaa----------GUgCUUCa -5' |
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28020 | 3' | -50.8 | NC_005887.1 | + | 22130 | 0.67 | 0.780426 |
Target: 5'- uUGGCUCGCuGAucGCgcucgGCUUCaucgGCGAAGg -3' miRNA: 3'- cAUCGAGCG-CU--UGa----CGAAG----UGCUUCa -5' |
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28020 | 3' | -50.8 | NC_005887.1 | + | 12326 | 0.68 | 0.769763 |
Target: 5'- -cAGCUCaGCGAACUGCguacgUCGCu---- -3' miRNA: 3'- caUCGAG-CGCUUGACGa----AGUGcuuca -5' |
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28020 | 3' | -50.8 | NC_005887.1 | + | 29334 | 0.69 | 0.668235 |
Target: 5'- --uGCUCGa--GCUGCUUCACGGAa- -3' miRNA: 3'- cauCGAGCgcuUGACGAAGUGCUUca -5' |
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28020 | 3' | -50.8 | NC_005887.1 | + | 17923 | 0.7 | 0.621533 |
Target: 5'- --uGCUCGCGAcCUGCgugcgCACGAAc- -3' miRNA: 3'- cauCGAGCGCUuGACGaa---GUGCUUca -5' |
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28020 | 3' | -50.8 | NC_005887.1 | + | 40159 | 0.7 | 0.620364 |
Target: 5'- --cGCUCGCcgcguguGAGCUGCgcgacggCACGAAGg -3' miRNA: 3'- cauCGAGCG-------CUUGACGaa-----GUGCUUCa -5' |
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28020 | 3' | -50.8 | NC_005887.1 | + | 29525 | 0.71 | 0.586573 |
Target: 5'- cUGGUUCGUGAauuccgggcucaGCUGCUuccccucguUCACGAGGg -3' miRNA: 3'- cAUCGAGCGCU------------UGACGA---------AGUGCUUCa -5' |
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28020 | 3' | -50.8 | NC_005887.1 | + | 30896 | 0.71 | 0.574991 |
Target: 5'- --uGUUCGCGAGCUGCgcgUUGCGAu-- -3' miRNA: 3'- cauCGAGCGCUUGACGa--AGUGCUuca -5' |
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28020 | 3' | -50.8 | NC_005887.1 | + | 16337 | 0.72 | 0.528161 |
Target: 5'- --cGC-CGCGAACUGCUUCAUcagcuugGGAGg -3' miRNA: 3'- cauCGaGCGCUUGACGAAGUG-------CUUCa -5' |
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28020 | 3' | -50.8 | NC_005887.1 | + | 28481 | 1.07 | 0.002547 |
Target: 5'- gGUAGCUCGCGAACUGCUUCACGAAGUc -3' miRNA: 3'- -CAUCGAGCGCUUGACGAAGUGCUUCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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