Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28021 | 3' | -64.9 | NC_005887.1 | + | 1004 | 0.67 | 0.207046 |
Target: 5'- cCGGCGGCGCGCggaucguacucaacCGGCGucacgaccGUgaUGCGGuGu -3' miRNA: 3'- -GCCGCCGCGCG--------------GCCGC--------CA--ACGCCuCc -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 1489 | 0.69 | 0.161641 |
Target: 5'- gCGuGCGGCGCucGCgCGGCGcGgccgUGCGGAa- -3' miRNA: 3'- -GC-CGCCGCG--CG-GCCGC-Ca---ACGCCUcc -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 1589 | 0.67 | 0.206526 |
Target: 5'- uCGGCGGCGCGCggcgcgccaaCGGCGaucgccucgacGCGGGcGGc -3' miRNA: 3'- -GCCGCCGCGCG----------GCCGCcaa--------CGCCU-CC- -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 3875 | 0.68 | 0.18569 |
Target: 5'- aCGGCGGCaGC-CCGGCauacgacgccaugccGGaugUGCGGAuGGc -3' miRNA: 3'- -GCCGCCG-CGcGGCCG---------------CCa--ACGCCU-CC- -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 4399 | 0.68 | 0.188549 |
Target: 5'- aGGCaauGCGCGCCGGCGaaGgcGCGGcGa -3' miRNA: 3'- gCCGc--CGCGCGGCCGC--CaaCGCCuCc -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 5813 | 0.7 | 0.124412 |
Target: 5'- aCGGCGGCGaucgaGUCGGCgcgGGUcGCGaAGGg -3' miRNA: 3'- -GCCGCCGCg----CGGCCG---CCAaCGCcUCC- -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 9070 | 0.67 | 0.224847 |
Target: 5'- uGGaaGUGCGCCGGC---UGCGGcGGGa -3' miRNA: 3'- gCCgcCGCGCGGCCGccaACGCC-UCC- -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 10051 | 0.66 | 0.241547 |
Target: 5'- -uGCGGCGCGCCGGCuGGcccgacgaUcgccccgUGUGGAccGGa -3' miRNA: 3'- gcCGCCGCGCGGCCG-CC--------A-------ACGCCU--CC- -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 11552 | 0.77 | 0.033587 |
Target: 5'- uCGGCGcGCaGCGCgCGGCGGUcGCGGAaucGGg -3' miRNA: 3'- -GCCGC-CG-CGCG-GCCGCCAaCGCCU---CC- -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 13372 | 0.66 | 0.254276 |
Target: 5'- cCGGCgauGGCGCucgcgcugaagGCCGGCGcg-GCGGAc- -3' miRNA: 3'- -GCCG---CCGCG-----------CGGCCGCcaaCGCCUcc -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 14541 | 0.68 | 0.169329 |
Target: 5'- uCGGCGGCGCGUCGaucggcaugucgcgcGCGGaagaccugaaacgGCaGGGGGu -3' miRNA: 3'- -GCCGCCGCGCGGC---------------CGCCaa-----------CG-CCUCC- -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 17341 | 0.66 | 0.254276 |
Target: 5'- cCGGCGGC-CGCCGGCGcgaGCuGAc- -3' miRNA: 3'- -GCCGCCGcGCGGCCGCcaaCGcCUcc -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 18552 | 0.71 | 0.106059 |
Target: 5'- gGGCGGCgGCGCCGGCuuc-GCGGGc- -3' miRNA: 3'- gCCGCCG-CGCGGCCGccaaCGCCUcc -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 22262 | 0.66 | 0.242141 |
Target: 5'- aCGGUGGCGCGCagcaGGCGau--CGGAu- -3' miRNA: 3'- -GCCGCCGCGCGg---CCGCcaacGCCUcc -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 23252 | 0.68 | 0.18101 |
Target: 5'- gCGGuCGGCGCGCaaaaggcgcagcucgUGGCGGUUGCc---- -3' miRNA: 3'- -GCC-GCCGCGCG---------------GCCGCCAACGccucc -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 25020 | 0.69 | 0.161641 |
Target: 5'- cCGGCGGC-CGCCGGCcagccGGUaGCGcAGa -3' miRNA: 3'- -GCCGCCGcGCGGCCG-----CCAaCGCcUCc -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 25495 | 0.66 | 0.230492 |
Target: 5'- gCGGCGGCucggacgaugGCG-CGGCGGgugGCGGc-- -3' miRNA: 3'- -GCCGCCG----------CGCgGCCGCCaa-CGCCucc -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 26207 | 0.8 | 0.02032 |
Target: 5'- --uCGGCGCGCCGGUGGUUGgCGGGGu -3' miRNA: 3'- gccGCCGCGCGGCCGCCAAC-GCCUCc -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 26653 | 0.66 | 0.248147 |
Target: 5'- cCGGCGGCGgaaucauccggcCGCgCGGCGGUgaGCuGGucGa -3' miRNA: 3'- -GCCGCCGC------------GCG-GCCGCCAa-CG-CCucC- -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 28331 | 1.08 | 0.000116 |
Target: 5'- cCGGCGGCGCGCCGGCGGUUGCGGAGGc -3' miRNA: 3'- -GCCGCCGCGCGGCCGCCAACGCCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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