Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28021 | 3' | -64.9 | NC_005887.1 | + | 36867 | 0.66 | 0.232783 |
Target: 5'- gCGGcCGGUgcuGCGCCaucggccugcgucguGGUGGaUGCGGcAGGa -3' miRNA: 3'- -GCC-GCCG---CGCGG---------------CCGCCaACGCC-UCC- -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 35075 | 0.66 | 0.232783 |
Target: 5'- uCGGCgGGCGCGaCUucgaagucgucuucgGGCGGUUGaauuucGAGGg -3' miRNA: 3'- -GCCG-CCGCGC-GG---------------CCGCCAACgc----CUCC- -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 10051 | 0.66 | 0.241547 |
Target: 5'- -uGCGGCGCGCCGGCuGGcccgacgaUcgccccgUGUGGAccGGa -3' miRNA: 3'- gcCGCCGCGCGGCCG-CC--------A-------ACGCCU--CC- -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 22262 | 0.66 | 0.242141 |
Target: 5'- aCGGUGGCGCGCagcaGGCGau--CGGAu- -3' miRNA: 3'- -GCCGCCGCGCGg---CCGCcaacGCCUcc -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 41609 | 0.66 | 0.242141 |
Target: 5'- gGuGCGGCG-GCCGGCGcGgccCGuGAGGa -3' miRNA: 3'- gC-CGCCGCgCGGCCGC-CaacGC-CUCC- -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 31391 | 0.66 | 0.247541 |
Target: 5'- uCGGCGuagcgguGCGUGCC-GUGGUUcaGCGGGGu -3' miRNA: 3'- -GCCGC-------CGCGCGGcCGCCAA--CGCCUCc -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 26653 | 0.66 | 0.248147 |
Target: 5'- cCGGCGGCGgaaucauccggcCGCgCGGCGGUgaGCuGGucGa -3' miRNA: 3'- -GCCGCCGC------------GCG-GCCGCCAa-CG-CCucC- -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 28502 | 0.66 | 0.248147 |
Target: 5'- ----cGCGCGCCGGCGGgaagaugacgaUGCGGucAGGc -3' miRNA: 3'- gccgcCGCGCGGCCGCCa----------ACGCC--UCC- -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 30947 | 0.66 | 0.248147 |
Target: 5'- uCGGCGGUGaUGUCGGCGcccGCGuacguGAGGa -3' miRNA: 3'- -GCCGCCGC-GCGGCCGCcaaCGC-----CUCC- -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 17341 | 0.66 | 0.254276 |
Target: 5'- cCGGCGGC-CGCCGGCGcgaGCuGAc- -3' miRNA: 3'- -GCCGCCGcGCGGCCGCcaaCGcCUcc -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 13372 | 0.66 | 0.254276 |
Target: 5'- cCGGCgauGGCGCucgcgcugaagGCCGGCGcg-GCGGAc- -3' miRNA: 3'- -GCCG---CCGCG-----------CGGCCGCcaaCGCCUcc -5' |
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28021 | 3' | -64.9 | NC_005887.1 | + | 40690 | 0.66 | 0.260529 |
Target: 5'- uGGCGcGCGCGCaCGGCug--GCaGGAGc -3' miRNA: 3'- gCCGC-CGCGCG-GCCGccaaCG-CCUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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