miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28021 5' -56.8 NC_005887.1 + 28371 1.05 0.000926
Target:  5'- cUUCGUCGGGAACGUCAGGUGCACCGUg -3'
miRNA:   3'- -AAGCAGCCCUUGCAGUCCACGUGGCA- -5'
28021 5' -56.8 NC_005887.1 + 17267 0.73 0.210863
Target:  5'- aUCGUgcCGGGcgaGACGUCGGGcgGCGCCGc -3'
miRNA:   3'- aAGCA--GCCC---UUGCAGUCCa-CGUGGCa -5'
28021 5' -56.8 NC_005887.1 + 39509 0.73 0.222451
Target:  5'- ---aUUGGG-AUGUCGGGUGCACCGc -3'
miRNA:   3'- aagcAGCCCuUGCAGUCCACGUGGCa -5'
28021 5' -56.8 NC_005887.1 + 10991 0.7 0.311369
Target:  5'- cUCGUCGaGGAugGcguggugcUCGGGUGCGgCGg -3'
miRNA:   3'- aAGCAGC-CCUugC--------AGUCCACGUgGCa -5'
28021 5' -56.8 NC_005887.1 + 28304 0.68 0.434544
Target:  5'- ----cCGGGAACGgcaucgucUCAGGcUGCGCCGg -3'
miRNA:   3'- aagcaGCCCUUGC--------AGUCC-ACGUGGCa -5'
28021 5' -56.8 NC_005887.1 + 24989 0.67 0.484886
Target:  5'- --gGUCGGGGuaguugccgaGCGUCAGcucGCGCCGg -3'
miRNA:   3'- aagCAGCCCU----------UGCAGUCca-CGUGGCa -5'
28021 5' -56.8 NC_005887.1 + 11030 0.66 0.516393
Target:  5'- gUCGgcaCGuGGGACGUgAccaccGGUGCGCCGa -3'
miRNA:   3'- aAGCa--GC-CCUUGCAgU-----CCACGUGGCa -5'
28021 5' -56.8 NC_005887.1 + 14199 0.66 0.559602
Target:  5'- -cUGUCGGGcGCGgccucggaCAGGgcgGCGCCGc -3'
miRNA:   3'- aaGCAGCCCuUGCa-------GUCCa--CGUGGCa -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.