miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28022 5' -57.1 NC_005887.1 + 28212 1.07 0.000722
Target:  5'- cCGUCGGCUCGGGCACAUCGAUCUGGUu -3'
miRNA:   3'- -GCAGCCGAGCCCGUGUAGCUAGACCA- -5'
28022 5' -57.1 NC_005887.1 + 11004 0.78 0.091482
Target:  5'- gCGUgGuGCUCGGGUGCggCGGUCUGGUc -3'
miRNA:   3'- -GCAgC-CGAGCCCGUGuaGCUAGACCA- -5'
28022 5' -57.1 NC_005887.1 + 7227 0.76 0.135855
Target:  5'- uGUCGGCgUCGGGCGCAUCGAc----- -3'
miRNA:   3'- gCAGCCG-AGCCCGUGUAGCUagacca -5'
28022 5' -57.1 NC_005887.1 + 29368 0.76 0.135855
Target:  5'- gGUCGGUgccgCGGGuCGCcgcuUCGGUCUGGUa -3'
miRNA:   3'- gCAGCCGa---GCCC-GUGu---AGCUAGACCA- -5'
28022 5' -57.1 NC_005887.1 + 8617 0.74 0.193988
Target:  5'- cCGUU-GCUCGGuGCACguGUCGAUCUGGc -3'
miRNA:   3'- -GCAGcCGAGCC-CGUG--UAGCUAGACCa -5'
28022 5' -57.1 NC_005887.1 + 14538 0.7 0.341136
Target:  5'- cCGUCGGC---GGCGCGUCGAUC-GGc -3'
miRNA:   3'- -GCAGCCGagcCCGUGUAGCUAGaCCa -5'
28022 5' -57.1 NC_005887.1 + 8200 0.69 0.402339
Target:  5'- uGUCGGCUCuGGCAaGUCGGcccUCUGuGg -3'
miRNA:   3'- gCAGCCGAGcCCGUgUAGCU---AGAC-Ca -5'
28022 5' -57.1 NC_005887.1 + 19796 0.68 0.450105
Target:  5'- aG-CGuCUCGGGCAUGUCGAUCgcGGa -3'
miRNA:   3'- gCaGCcGAGCCCGUGUAGCUAGa-CCa -5'
28022 5' -57.1 NC_005887.1 + 34152 0.67 0.460029
Target:  5'- uGUCGGUgcgCGGGUagACAUCGAaCUGc- -3'
miRNA:   3'- gCAGCCGa--GCCCG--UGUAGCUaGACca -5'
28022 5' -57.1 NC_005887.1 + 33906 0.67 0.480217
Target:  5'- uCGUCGuGCUCGGGagugaagccuuCGCGUCGAcCUGc- -3'
miRNA:   3'- -GCAGC-CGAGCCC-----------GUGUAGCUaGACca -5'
28022 5' -57.1 NC_005887.1 + 27983 0.67 0.500828
Target:  5'- cCGcCGGCUCGGGCcgaaucGCGUCG-UC-GGc -3'
miRNA:   3'- -GCaGCCGAGCCCG------UGUAGCuAGaCCa -5'
28022 5' -57.1 NC_005887.1 + 18159 0.67 0.509181
Target:  5'- aCGUCGGCaacacgacgcugUGGGCGgcUAUCGAUCgGGc -3'
miRNA:   3'- -GCAGCCGa-----------GCCCGU--GUAGCUAGaCCa -5'
28022 5' -57.1 NC_005887.1 + 6945 0.66 0.540997
Target:  5'- uCGUgGGCgaaggccgugcgCGGGCGCAUCGAgcaugagCUGu- -3'
miRNA:   3'- -GCAgCCGa-----------GCCCGUGUAGCUa------GACca -5'
28022 5' -57.1 NC_005887.1 + 40886 0.66 0.575633
Target:  5'- cCGUCGGCgUCGGGCuccugcucgcACAU-GAUC-GGa -3'
miRNA:   3'- -GCAGCCG-AGCCCG----------UGUAgCUAGaCCa -5'
28022 5' -57.1 NC_005887.1 + 1369 0.66 0.575633
Target:  5'- -uUCGaGCUCGGGCACGUacAUCaGGc -3'
miRNA:   3'- gcAGC-CGAGCCCGUGUAgcUAGaCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.