miRNA display CGI


Results 61 - 80 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28023 5' -56.8 NC_005887.1 + 35126 0.68 0.433825
Target:  5'- gGGCGcGGAUCGGAauCCGgCGCCacGGACg -3'
miRNA:   3'- gCCGU-UCUAGCCUacGGC-GCGG--CUUG- -5'
28023 5' -56.8 NC_005887.1 + 38295 0.68 0.433825
Target:  5'- -cGCAAcGGUCaGGGUGCCGuCGCCGu-- -3'
miRNA:   3'- gcCGUU-CUAG-CCUACGGC-GCGGCuug -5'
28023 5' -56.8 NC_005887.1 + 1493 0.68 0.44361
Target:  5'- gCGGCGcucGcgCGGcgcgGCCGUGCgGAACa -3'
miRNA:   3'- -GCCGUu--CuaGCCua--CGGCGCGgCUUG- -5'
28023 5' -56.8 NC_005887.1 + 33953 0.66 0.569258
Target:  5'- uCGGCGAGcacGUCGcGUGCgGCGuCCGucAGCa -3'
miRNA:   3'- -GCCGUUC---UAGCcUACGgCGC-GGC--UUG- -5'
28023 5' -56.8 NC_005887.1 + 2706 0.66 0.569258
Target:  5'- gCGGCAAG--CGGccgaGCCGCGCgacgaCGGACu -3'
miRNA:   3'- -GCCGUUCuaGCCua--CGGCGCG-----GCUUG- -5'
28023 5' -56.8 NC_005887.1 + 14345 0.66 0.547469
Target:  5'- gCGGC--GAUCGuGAaGCagCGUGCCGGGCa -3'
miRNA:   3'- -GCCGuuCUAGC-CUaCG--GCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 2228 0.66 0.547469
Target:  5'- uGGCGcauccGGUCGGAagucGUCGCGaCGAGCa -3'
miRNA:   3'- gCCGUu----CUAGCCUa---CGGCGCgGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 18539 0.66 0.536672
Target:  5'- gGGCGuucucGGUgGGcgGCgGCGCCGGc- -3'
miRNA:   3'- gCCGUu----CUAgCCuaCGgCGCGGCUug -5'
28023 5' -56.8 NC_005887.1 + 27032 0.66 0.536672
Target:  5'- uCGGCGAGcgCGcGAccgcgcacgcUGCCGC-CCGAc- -3'
miRNA:   3'- -GCCGUUCuaGC-CU----------ACGGCGcGGCUug -5'
28023 5' -56.8 NC_005887.1 + 18137 0.66 0.52595
Target:  5'- cCGGCgAAGcgCGGGccgccgacGUCGUGCCGAAg -3'
miRNA:   3'- -GCCG-UUCuaGCCUa-------CGGCGCGGCUUg -5'
28023 5' -56.8 NC_005887.1 + 14687 0.67 0.515309
Target:  5'- -cGCAcGAUCGGGcucGUCGCGgCGGGCg -3'
miRNA:   3'- gcCGUuCUAGCCUa--CGGCGCgGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 1831 0.67 0.513192
Target:  5'- aCGGCAucuUCGGcgacacgaaCGCGCCGGACu -3'
miRNA:   3'- -GCCGUucuAGCCuacg-----GCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 14204 0.67 0.504757
Target:  5'- gGGCGcGGccUCGGAcaggGCgGCGCCGcGCu -3'
miRNA:   3'- gCCGUuCU--AGCCUa---CGgCGCGGCuUG- -5'
28023 5' -56.8 NC_005887.1 + 30274 0.67 0.494299
Target:  5'- cCGGCGcgacGAUCG--UGCCGCGCaCGAc- -3'
miRNA:   3'- -GCCGUu---CUAGCcuACGGCGCG-GCUug -5'
28023 5' -56.8 NC_005887.1 + 32788 0.67 0.493259
Target:  5'- uGcGCAGGAUCGGcgcgcGCCGCuucacggGCaCGAACa -3'
miRNA:   3'- gC-CGUUCUAGCCua---CGGCG-------CG-GCUUG- -5'
28023 5' -56.8 NC_005887.1 + 15651 0.67 0.483941
Target:  5'- gGGCGccguGUCGcaGAUG-CGCGCCGAGCu -3'
miRNA:   3'- gCCGUuc--UAGC--CUACgGCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 16889 0.67 0.463546
Target:  5'- aGGCAacgAGGUUGcaaagGCUGCaGCCGAGCa -3'
miRNA:   3'- gCCGU---UCUAGCcua--CGGCG-CGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 5048 0.67 0.463546
Target:  5'- aGGCA----CGGcaaugGCCGCGCCGGAa -3'
miRNA:   3'- gCCGUucuaGCCua---CGGCGCGGCUUg -5'
28023 5' -56.8 NC_005887.1 + 17157 0.68 0.453519
Target:  5'- uCGGCgAAGAUCGcGAgGCgugggaGCGCgCGAACg -3'
miRNA:   3'- -GCCG-UUCUAGC-CUaCGg-----CGCG-GCUUG- -5'
28023 5' -56.8 NC_005887.1 + 7124 0.68 0.453519
Target:  5'- aGGCGGGG-CGGcgcUGCgGCGCCGuucAACu -3'
miRNA:   3'- gCCGUUCUaGCCu--ACGgCGCGGC---UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.