miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28023 5' -56.8 NC_005887.1 + 625 0.66 0.536672
Target:  5'- gCGcCGGGAUCGGAUcGCCGC-CCGu-- -3'
miRNA:   3'- -GCcGUUCUAGCCUA-CGGCGcGGCuug -5'
28023 5' -56.8 NC_005887.1 + 802 0.67 0.515309
Target:  5'- uGGCu-GAcuUCGcGUG-CGCGCCGAGCg -3'
miRNA:   3'- gCCGuuCU--AGCcUACgGCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 957 0.66 0.52595
Target:  5'- uCGGCAucGUCGGAgaacacGUCGCGCacggucugcuCGAACg -3'
miRNA:   3'- -GCCGUucUAGCCUa-----CGGCGCG----------GCUUG- -5'
28023 5' -56.8 NC_005887.1 + 1083 0.68 0.424166
Target:  5'- uGcGCAGGucgaCGGcgccauUGCCGaCGCCGAGCa -3'
miRNA:   3'- gC-CGUUCua--GCCu-----ACGGC-GCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 1147 0.66 0.547469
Target:  5'- gGGCAcgacgacgcgcGGGUCGGAUGCa--GCCaGGCg -3'
miRNA:   3'- gCCGU-----------UCUAGCCUACGgcgCGGcUUG- -5'
28023 5' -56.8 NC_005887.1 + 1493 0.68 0.44361
Target:  5'- gCGGCGcucGcgCGGcgcgGCCGUGCgGAACa -3'
miRNA:   3'- -GCCGUu--CuaGCCua--CGGCGCGgCUUG- -5'
28023 5' -56.8 NC_005887.1 + 1831 0.67 0.513192
Target:  5'- aCGGCAucuUCGGcgacacgaaCGCGCCGGACu -3'
miRNA:   3'- -GCCGUucuAGCCuacg-----GCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 1950 0.69 0.386855
Target:  5'- cCGGCAc-GUCG---GCCGUGCCGGGCa -3'
miRNA:   3'- -GCCGUucUAGCcuaCGGCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 2228 0.66 0.547469
Target:  5'- uGGCGcauccGGUCGGAagucGUCGCGaCGAGCa -3'
miRNA:   3'- gCCGUu----CUAGCCUa---CGGCGCgGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 2706 0.66 0.569258
Target:  5'- gCGGCAAG--CGGccgaGCCGCGCgacgaCGGACu -3'
miRNA:   3'- -GCCGUUCuaGCCua--CGGCGCG-----GCUUG- -5'
28023 5' -56.8 NC_005887.1 + 3173 0.72 0.247298
Target:  5'- uCGaCAAGuUCGGGcagcUGCCGCGcCCGGACa -3'
miRNA:   3'- -GCcGUUCuAGCCU----ACGGCGC-GGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 4686 0.7 0.343361
Target:  5'- aCGGCgAGGGUCuGAUgGgCGCGCCGAu- -3'
miRNA:   3'- -GCCG-UUCUAGcCUA-CgGCGCGGCUug -5'
28023 5' -56.8 NC_005887.1 + 4794 0.7 0.334278
Target:  5'- cCGGCGAGGccgugcucgCGGAucucgcgcaguucUGCCGCGCC-AACc -3'
miRNA:   3'- -GCCGUUCUa--------GCCU-------------ACGGCGCGGcUUG- -5'
28023 5' -56.8 NC_005887.1 + 5048 0.67 0.463546
Target:  5'- aGGCA----CGGcaaugGCCGCGCCGGAa -3'
miRNA:   3'- gCCGUucuaGCCua---CGGCGCGGCUUg -5'
28023 5' -56.8 NC_005887.1 + 5307 0.67 0.463546
Target:  5'- cCGGCAAGAagGG--GCUcaGCGCCGAc- -3'
miRNA:   3'- -GCCGUUCUagCCuaCGG--CGCGGCUug -5'
28023 5' -56.8 NC_005887.1 + 5845 0.66 0.580235
Target:  5'- gGGCGAag-CGGAgcucaCCGCGCUGAAa -3'
miRNA:   3'- gCCGUUcuaGCCUac---GGCGCGGCUUg -5'
28023 5' -56.8 NC_005887.1 + 5920 0.66 0.558333
Target:  5'- gGGCAAGAagccg-GCCGCGCgGAAg -3'
miRNA:   3'- gCCGUUCUagccuaCGGCGCGgCUUg -5'
28023 5' -56.8 NC_005887.1 + 6081 0.69 0.37787
Target:  5'- uCGaGCGAGuacgCGGAcgaaggcacgGCCGCGCaCGAGCu -3'
miRNA:   3'- -GC-CGUUCua--GCCUa---------CGGCGCG-GCUUG- -5'
28023 5' -56.8 NC_005887.1 + 6214 0.68 0.453519
Target:  5'- cCGGCGAGAcgaUCaccGA-GCCaCGCCGGACg -3'
miRNA:   3'- -GCCGUUCU---AGc--CUaCGGcGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 6432 0.68 0.414636
Target:  5'- uGGC-----CGGAcgGCCGCGCCGAGa -3'
miRNA:   3'- gCCGuucuaGCCUa-CGGCGCGGCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.